1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTTTCACCATTGTAGTGGATTCCACTTCGGAACTGAACTTTTCTAGTTGTTTCCGTGACAATGAAAACTCACGAGAGAGCTGCTAATTTGGCCCTTGCAGgtatacatttgtattcggctgagtcatcacagcattggttctgtttattaccattttctagtcctttgaacaaactgggtatttgctgagctgcagttctatgtattctaacattgtacgcag
species | Oryza sativa |
transcript | LOC_Os02g02530.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTCCGTGACAATGAAAACTCACGAGAGAGCTGCTAATTTGGCCCTTGCAG GTTTGAGCTTGGCACCCCTTGTGGTTAAAGTAGAGCCAAATGTGAACGTCAEST: gi|701074|gb|D47365.1|D47365
genomic: TTCCGTGACAATGAAAACTCACGAGAGAGCTGCTAATTTGGCCCTTGCAGgtatacattt ... ttgtacgcagGTTTGAGCTTGGCACCCCTTGTGGTTAAAGTAGAGCCAAATGTGAACGTCA
EST: TTCCGTGACAATGAAAACTCACGAGAGAGCTGCTAATTTGGCCCTTGCAG GTTTGAGCTTGGCACCCCTTGTGGTTAAAGTAGAGCCAAATGTGAACGTCAEST: gi|701106|gb|D47397.1|D47397
genomic: TTCCGTGACAATGAAAACTCACGAGAGAGCTGCTAATTTGGCCCTTGCAGgtatacattt ... ttgtacgcagGTTTGAGCTTGGCACCCCTTGTGGTTAAAGTAGAGCCAAATGTGAACGTCA
EST: TTCCGTGACAATGAAAACTCACGAGAGAGCTGCTAATTTGGCCCTTGCAG GTTTGAGCTTGGCACCCCTTGTGGTTAAAGTAGAGCCAAATGTGAACGTCAEST: gi|701499|gb|D47790.1|D47790
genomic: TTCCGTGACAATGAAAACTCACGAGAGAGCTGCTAATTTGGCCCTTGCAGgtatacattt ... ttgtacgcagGTTTGAGCTTGGCACCCCTTGTGGTTAAAGTAGAGCCAAATGTGAACGTCA
EST: TTCCGTGACAATGAAAACTCACGAGAGAGCTGCTAATTTGGCCCTTGCAG GTTTGAGCTTGGCACCCCTTGTGGTTAAAGTAGAGCCAAATGTGAACGTCAEST: gi|88426472|gb|CI576714.1|CI576714
genomic: TTCCGTGACAATGAAAACTCACGAGAGAGCTGCTAATTTGGCCCTTGCAGgtatacattt ... ttgtacgcagGTTTGAGCTTGGCACCCCTTGTGGTTAAAGTAGAGCCAAATGTGAACGTCA
EST: TTCCGTGACAATGAAAACTCACGAGAGAGCTGCTAATTTGGCCCTTGCAG GTTTGAGCTTGGCACCCCTTGTGGTTAAAGTAGAGCCAAATGTGAACGTCAEST: gi|700874|gb|D47165.1|D47165
genomic: TTCCGTGACAATGAAAACTCACGAGAGAGCTGCTAATTTGGCCCTTGCAGgtatacattt ... ttgtacgcagGTTTGAGCTTGGCACCCCTTGTGGTTAAAGTAGAGCCAAATGTGAACGTCA
EST: TTCCGTGACAATGAAAACTCACGAGAGAGCTGCTAATTTGGCCCTTGCAG GTTTGAGCTTGGCACCCCTTGTGGTTAAAGTAGAGCCAAATGTGAACGTCA
genomic: TTCCGTGACAATGAAAACTCACGAGAGAGCTGCTAATTTGGCCCTTGCAGgtatacattt ... ttgtacgcagGTTTGAGCTTGGCACCCCTTGTGGTTAAAGTAGAGCCAAATGTGAACGTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTCACCATTGTAGTGGATTCCACTTCGGAACTGAACTTTTCTAGTTGTTTCCGTGACAATGAAAACTCACGAGAGAGCTGCTAATTTGGCCCTTGCAGgtatacatttgtattcggctgagtcatcacagcattggttctgtttattaccattttctagtcctttgaacaaactgggtatttgctgagctgcagttctatgtattctaacattgtacgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT