1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
CGGACTCTACGTGATGCTCTAGATTATGATCGGTCTGCTCTTGTACGCTACTTCTCCGCTGCTTCTGCATCCTTTCCCACAAAGGGAGGTGCTGCTGCTGgtatgtgctgtactagtagcctttttctctttttctcaattgatttactggagtatatgcatgcaatctgtttgtttgtttgtttgtttgttcaaccaat...
species | Oryza sativa |
transcript | LOC_Os02g01500.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTTCTCCGCTGCTTCTGCATCCTTTCCCACAACGGGAGGTGCTGCTGCTG GTGTTGAGAAAAGAATTGGTGGCGCCAGATTCCCTCAGTGCAAGCAGCCTGEST: gi|86831796|gb|CI303236.1|CI303236
genomic: CTTCTCCGCTGCTTCTGCATCCTTTCCCACAAAGGGAGGTGCTGCTGCTGgtatgtgctg ... gtttctgcagGTGTTGAGAAAAGAATTGGTGGCGCCAGATTCCCTCAGTGCAAGCAGCCTG
EST: CTTCTCCGCTGCTTCTGCATCCTTTCCCACAAAGGGAGGTGCTGCTGCTG GTGTTGAGAAAAGAATTGGTGGCGCCAGATTCCCTCAGTGCAAGCAGCCTGEST: gi|87009024|gb|CI304967.1|CI304967
genomic: CTTCTCCGCTGCTTCTGCATCCTTTCCCACAAAGGGAGGTGCTGCTGCTGgtatgtgctg ... gtttctgcagGTGTTGAGAAAAGAATTGGTGGCGCCAGATTCCCTCAGTGCAAGCAGCCTG
EST: CTTCTCCGCTGCTTCTGCATCCTTTCCCACAAAGGGAGGTGCTGCTGCTG GTGTTGAGAAAAGAATTGGTGGCGCCAGATTCCC
genomic: CTTCTCCGCTGCTTCTGCATCCTTTCCCACAAAGGGAGGTGCTGCTGCTGgtatgtgctg ... gtttctgcagGTGTTGAGAAAAGAATTGGTGGCGCCAGATTCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGACTCTACGTGATGCTCTAGATTATGATCGGTCTGCTCTTGTACGCTACTTCTCCGCTGCTTCTGCATCCTTTCCCACAAAGGGAGGTGCTGCTGCTGgtatgtgctgtactagtagcctttttctctttttctcaattgatttactggagtatatgcatgcaatctgtttgtttgtttgtttgtttgttcaaccaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT