1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CGCCGCCGGCTCTGAATCGCCGGTGCCGGTGGTAACGGTGGATGTGGCGGCGGCGAGCGACCTTATCACCTCGGCCGGCCACCGTTACGTCGACGTCAGgtactactacctatctgtctgtctgtctttgcatcctcccctagctatatctatcgatatcatgtaggagtatatgaatatcaggatatatatgatccat...
species | Oryza sativa |
transcript | LOC_Os02g01220.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCGGCGAGCGACCTTATCACCTCGGCCGGCCACCGTTACGTCGACGTCAG GACAGAGGAGGAAATGAACAAGGGCCATCTACACAACTCCCTCAACGTGCCEST: gi|86547077|gb|CI187283.1|CI187283
genomic: GCGGCGAGCGACCTTATCACCTCGGCCGGCCACCGTTACGTCGACGTCAGgtactactac ... gattatgcagGACAGAGGAGGAAATGAACAAGGGCCATCTACACAACTCCCTCAACGTGCC
EST: ACCTCGGCCGGCCACCGTTACGTCGACGTCAG GACAGAGGAGGAAATGAACAAGGGCCATCTACACAACTCCCTCAACGTGCCEST: gi|88977408|gb|CI025145.1|CI025145
genomic: ACCTCGGCCGGCCACCGTTACGTCGACGTCAGgtactactac ... gattatgcagGACAGAGGAGGAAATGAACAAGGGCCATCTACACAACTCCCTCAACGTGCC
EST: GGCCGGCCACCGTTACGTCGACGTCAG GACAGAGGAGGAAATGAACAAGGGCCATCTACACAACTCCCTCAACGTGCCEST: gi|88239644|gb|CI238806.1|CI238806
genomic: GGCCGGCCACCGTTACGTCGACGTCAGgtactactac ... gattatgcagGACAGAGGAGGAAATGAACAAGGGCCATCTACACAACTCCCTCAACGTGCC
EST: ACCTCGGCCGGCCACCGTTACGTCGACGTCAG GACAGAGGAGGAAATGAACAAGGGCGATCTACACAACTCCCTCAACGTGCCEST: gi|88201185|gb|CI201540.1|CI201540
genomic: ACCTCGGCCGGCCACCGTTACGTCGACGTCAGgtactactac ... gattatgcagGACAGAGGAGGAAATGAACAAGGGCCATCTACACAACTCCCTCAACGTGCC
EST: GAGCGACCTTATCACCTCGTCCGGCCACCGTTACGTCGACGTCAG GACAGAGGAGGAAATGAACAAGGGCCATCTACACAACTCCCTCAACGTGCC
genomic: GAGCGACCTTATCACCTCGGCCGGCCACCGTTACGTCGACGTCAGgtactactac ... gattatgcagGACAGAGGAGGAAATGAACAAGGGCCATCTACACAACTCCCTCAACGTGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCCGCCGGCTCTGAATCGCCGGTGCCGGTGGTAACGGTGGATGTGGCGGCGGCGAGCGACCTTATCACCTCGGCCGGCCACCGTTACGTCGACGTCAGgtactactacctatctgtctgtctgtctttgcatcctcccctagctatatctatcgatatcatgtaggagtatatgaatatcaggatatatatgatccat
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