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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGCGCCGGCGGAACAGCCTTCAGCAACATGGCCGTCGGGTACAACAACGTCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCTgtcagttctgccgccctctgcttcttgatttctagactatcttactggatggtaatttacttacatacgtacacatgtacag

Basic information

species Oryza sativa
transcript LOC_Os02g01150.3
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29682997|gb|CB679272.1|CB679272
EST:     TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCT                         GGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGCG
genomic: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCTgtcagttctg ... acatgtacagGGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGCG
EST: gi|88388887|gb|CI592775.1|CI592775
EST:     TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCT                         GGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGCG
genomic: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCTgtcagttctg ... acatgtacagGGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGCG
EST: gi|33683103|gb|CF311342.1|CF311342
EST:     TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCT                         GGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGCG
genomic: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCTgtcagttctg ... acatgtacagGGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGCG
EST: gi|10794734|gb|AU108700.1|AU108700
EST:     TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCC-TCGGCAACACGCCT                         GGCGTTCTGACGGAGACGACGGCGGA-CTGGCCGCGTCTCTGTCGCTGGCG
genomic: TCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCTgtcagttctg ... acatgtacagGGCGTTCTGACGGAGACGACGGCGGAGCTGGCCGCGTCTCTGTCGCTGGCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCGCGCCGGCGGAACAGCCTTCAGCAACATGGCCGTCGGGTACAACAACGTCGACGTGGAGGCCGCCAATAGGAACGGCATCGCCGTCGGCAACACGCCTgtcagttctgccgccctctgcttcttgatttctagactatcttactggatggtaatttacttacatacgtacacatgtacag

- - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG