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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCAAGGGAGGAAGGGGTGGCCGCGCTTTGGAACGGCATCATCCCTGGCCTTCACCGCCAGTGCGTCTATGGCGGACTCCGCATCGCCTTGTATGAGCCTgtcagttagtgctcctttccttctgtttcatactactatttcatatacattttcttctttcttctgtcaaagcacttcatgtcaacaccattaattatcccctccttaccttgcag

Basic information

species Oryza sativa
transcript LOC_Os01g74640.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g74640.3 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G165629_T02 (Zea mays), 5'ss of exon 2
CGCAAGGGAGGAAGGGGTGGCCGCGCTTTGGAACGGCATCATCCCTGGCCTTCACCGCCAGTGCGTCTATGGCGGACTCCGCATCGCCTTGTATGAGCCTgtcagttagtgctcctttccttctgtttcatactactatttcatatacattttcttctttcttctgtcaaagcacttcatgtcaacaccattaattatcccctc-cttaccttgcag
||| |||||||||||||| |||||||| ||||| ||| ||||||| ||||| ||||| |||| | |||||||||| |||||||||  ||||||||||||||||     || |||||   |              | | |||||  |   |  ||   ||     || |      | ||| | ||| |     |||| |||| || |||  |||||||
CGCCAGGGAGGAAGGGGTTGCCGCGCTCTGGAAGGGCGTCATCCCCGGCCTCCACCGTCAGTTCCTCTATGGCGGCCTCCGCATCAGCTTGTATGAGCCTgtct----gtactcctccac--------------attctttcacctgtctcctcccattcaaagtgac----ttcctcacgacaataaagggaattttcccttctctttacttgcag

upper sequence: LOC_Os01g74640.3 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM5G852877_T02 (Zea mays), 5'ss of exon 2
CGCAAGGGAGGAAGGGGTGGCCGCGCTTTGGAACGGCATCATCCCTGGCCTTCACCGCCAGTGCGTCTATGGCGGACTCCGCATCGCCTTGTATGAGCCTgtcagttagtgctcctttccttctgtttcatactactatttcatatacattttcttctttcttctgtcaaagc-acttcatgtcaacaccatt----aattatcccctccttac-cttgcag
||| |||||||||||||| |||||||| ||||| ||| ||||||| ||||| ||||| |||| | |||||||||| |||||||||| ||||||||||||||||     || |||||   |              | | |||||  |   |  || || | |   |  |||||  ||||  |  |||||  |      ||||  ||| ||  ||  |||||||
CGCCAGGGAGGAAGGGGTTGCCGCGCTCTGGAAGGGCGTCATCCCCGGCCTCCACCGTCAGTTCCTCTATGGCGGCCTCCGCATCGGCTTGTATGAGCCTgtct----gtactcctccac--------------attctttcacctgtctcctcctcctccgatt--caaagtgactttctcacaacaataaaggggaatttccccttctatatacttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58655848|gb|CK044528.1|CK044528
EST:     TTCACCGCCAGTGCGTCTATGGCGGACTCCGCATCGCCTTGTATGAGCCT                         GTGAAAGCCTTCTTTATCCGAGACGGAGATACTGTTGCTGGTGGTGTCAGT
genomic: TTCACCGCCAGTGCGTCTATGGCGGACTCCGCATCGCCTTGTATGAGCCTgtcagttagt ... taccttgcagGTGAAAGCCTTCTTTATCCGAGACGGAGATACTGTTGCTGGTGGTGTCAGT
EST: gi|88692659|gb|CI736234.1|CI736234
EST:     TTCACCGCCAGTGCGTCTATGGCGGACTCCGCATCGCCTTGTATGAGCCT                         GTGAAAGCCTTCTTTATCCGAGACGGAGATACTGTTG
genomic: TTCACCGCCAGTGCGTCTATGGCGGACTCCGCATCGCCTTGTATGAGCCTgtcagttagt ... taccttgcagGTGAAAGCCTTCTTTATCCGAGACGGAGATACTGTTG
EST: gi|88305150|gb|CI652088.1|CI652088
EST:     TTCACCGCCAGTGCGTCTATGGCGGACTCCGCATCGCCTTGTATGAGCCT                         GTGAAAGCCTTCTTTATCCGAGACGGAGATACTGTTGCTGGTGGTGTCAGT
genomic: TTCACCGCCAGTGCGTCTATGGCGGACTCCGCATCGCCTTGTATGAGCCTgtcagttagt ... taccttgcagGTGAAAGCCTTCTTTATCCGAGACGGAGATACTGTTGCTGGTGGTGTCAGT
EST: gi|88352327|gb|CI615581.1|CI615581
EST:     TTCACCGCCAGTGCGTCTATGGCGGACTCCGCATCGCCTTGTATGAGCCT                         GTGAAAGCCTTCTTTATCCGAGACGGAGATACTGTTGCTGGTGGTGTCAGT
genomic: TTCACCGCCAGTGCGTCTATGGCGGACTCCGCATCGCCTTGTATGAGCCTgtcagttagt ... taccttgcagGTGAAAGCCTTCTTTATCCGAGACGGAGATACTGTTGCTGGTGGTGTCAGT
EST: gi|88375556|gb|CI681339.1|CI681339
EST:     TTCACCGCCAGTGCGTCTATGGCGGACTCCGCATCGCCTTGTATGAGCCT                         GTGAAAGCCTTCTTTATCCGAGACGGAGATACTGTTGCTGGTGGTGTCAGT
genomic: TTCACCGCCAGTGCGTCTATGGCGGACTCCGCATCGCCTTGTATGAGCCTgtcagttagt ... taccttgcagGTGAAAGCCTTCTTTATCCGAGACGGAGATACTGTTGCTGGTGGTGTCAGT
EST: gi|88730203|gb|CI753818.1|CI753818
EST:     TTCACCGCCAGTGCGTCTATGGCGGACTCCGCATCGCCTTGTATGAGCCT                         GTGAAAGCCTTCTTTATCCGAGACGGAGAT
genomic: TTCACCGCCAGTGCGTCTATGGCGGACTCCGCATCGCCTTGTATGAGCCTgtcagttagt ... taccttgcagGTGAAAGCCTTCTTTATCCGAGACGGAGAT
EST: gi|88335568|gb|CI642792.1|CI642792
EST:     TTCACCGCCAGTGCGTCTATGGCGGACTCCGCATCGCCTTGTATGAGCCT                         GTGAAAGCCTTCTTTATCCGAGACGGAGATACTGTTGCTGGTGGTGTCAGT
genomic: TTCACCGCCAGTGCGTCTATGGCGGACTCCGCATCGCCTTGTATGAGCCTgtcagttagt ... taccttgcagGTGAAAGCCTTCTTTATCCGAGACGGAGATACTGTTGCTGGTGGTGTCAGT
EST: gi|88442656|gb|CI693657.1|CI693657
EST:     TTCACCGCCAGTGCGTCTATGGCGGACTCCGCATCGCCTTGTATGAGCCT                         GTGAAAGCCTTCTTTATCCCAGACGGAGATACCGTCGCTGGTGGTGTCAGT
genomic: TTCACCGCCAGTGCGTCTATGGCGGACTCCGCATCGCCTTGTATGAGCCTgtcagttagt ... taccttgcagGTGAAAGCCTTCTTTATCCGAGACGGAGATACTGTTGCTGGTGGTGTCAGT