1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AGTAAATCTATAGGAAATGGCTGACGGTGAGGATATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtcaggaacttcatcttttaaaccatctatcatctccaagactccaactgcatttttaccaatttgaattccttaaaattttgcag
species | Oryza sativa |
transcript | LOC_Os01g73310.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTGAGGATATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG GCTGGGTTTGCTGGAGATGATGCACCAAGGGCTGTTTTTCCTAGCATTGTTEST: gi|86902599|gb|CI306402.1|CI306402
genomic: GTGAGGATATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtcaggaact ... aattttgcagGCTGGGTTTGCTGGAGATGATGCACCAAGGGCTGTTTTTCCTAGCATTGTT
EST: GTGAGGATATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG GCTGGGTTTGCTGGAGATGATGCACCAAGGGCTGTTTTTCCTAGCATTGTTEST: gi|88574143|gb|CI665912.1|CI665912
genomic: GTGAGGATATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtcaggaact ... aattttgcagGCTGGGTTTGCTGGAGATGATGCACCAAGGGCTGTTTTTCCTAGCATTGTT
EST: GTGAGGATATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG GCTGGGTTTGCTGGAGATGATGCACCAAGGGCTGTCTTTCCTACCATTGTTEST: gi|88765086|gb|CI774204.1|CI774204
genomic: GTGAGGATATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtcaggaact ... aattttgcagGCTGGGTTTGCTGGAGATGATGCACCAAGGGCTGTTTTTCCTAGCATTGTT
EST: GTGAGGATATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG GCTGGGTTTGCTGGAGATGATGCACCAAGGGCTGTTTTTCCTAGCATTGTTEST: gi|88739690|gb|CI763198.1|CI763198
genomic: GTGAGGATATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtcaggaact ... aattttgcagGCTGGGTTTGCTGGAGATGATGCACCAAGGGCTGTTTTTCCTAGCATTGTT
EST: GTGAGGATATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG GCTGGGTTTGCTGGAGATGATGCACCAAGGGCTGTTTTTCCTAGCATTGTTEST: gi|88388305|gb|CI627844.1|CI627844
genomic: GTGAGGATATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtcaggaact ... aattttgcagGCTGGGTTTGCTGGAGATGATGCACCAAGGGCTGTTTTTCCTAGCATTGTT
EST: GTGAGGATATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG GCTGGGTTTGCTGGAGATGATGCACCAAGGGCTGTTTTTCCTACCATTGTTEST: gi|428863|gb|D25019.1|D25019
genomic: GTGAGGATATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtcaggaact ... aattttgcagGCTGGGTTTGCTGGAGATGATGCACCAAGGGCTGTTTTTCCTAGCATTGTT
EST: GTGAGGATATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG GCTGGGTTTGCTGGAGATGATGCACCAAGGGCTGTTTTTCCTAGCATTGTTEST: gi|88742905|gb|CI766413.1|CI766413
genomic: GTGAGGATATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtcaggaact ... aattttgcagGCTGGGTTTGCTGGAGATGATGCACCAAGGGCTGTTTTTCCTAGCATTGTT
EST: GTGAGGATATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG GCTGGGTTTGCTGGAGATGATGCACCAAGGGCTGTTTTTCCTAGCATTGTTEST: gi|88332048|gb|CI642273.1|CI642273
genomic: GTGAGGATATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtcaggaact ... aattttgcagGCTGGGTTTGCTGGAGATGATGCACCAAGGGCTGTTTTTCCTAGCATTGTT
EST: GTGAGGATATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG GCTGGGTTTGCTGGAGATGATGCACCAAGGGCTGTCTTCCCTACCATTGTTEST: gi|88310970|gb|CI657883.1|CI657883
genomic: GTGAGGATATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtcaggaact ... aattttgcagGCTGGGTTTGCTGGAGATGATGCACCAAGGGCTGTTTTTCCTAGCATTGTT
EST: GTGAGGATATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG GCTGGGTTTGCTGGAGATGATGCACCAAGGGCTGTTTTTCCTAGCATTGTT
genomic: GTGAGGATATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtcaggaact ... aattttgcagGCTGGGTTTGCTGGAGATGATGCACCAAGGGCTGTTTTTCCTAGCATTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTAAATCTATAGGAAATGGCTGACGGTGAGGATATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtcaggaacttcatcttttaaaccatctatcatctccaagactccaactgcatttttaccaatttgaattccttaaaattttgcag
- - - - - - - - - - - - - - GAGGAT