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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCAAGTCTGTTGATGAATATGCTCAAATCCTGGGGGATTGTCGGCATAAGTTGTTTGATGTCCGGTCAAAAAGGCCAAGGCCACATTTGGATGATAAGgttcttgcttaaatgtctggcacatccatttttttattgtcacataatgtactaactacagtctattttag

Basic information

species Oryza sativa
transcript LOC_Os01g70950.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g70950.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA03G36910.1 (Glycine max), 5'ss of exon 10
TGGCAAGTCTGTTGATGAATATGCTCAAATCCTGGGGGATTGTCGGCATAAGTTGTTTGATGTCCGGTCAAAAAGGCCAAGGCCACATTTGGATGATAAGgt-tcttgcttaaatg-tctggcacatccatttttttattgtcacataatgtactaactacagtctattttag----------------------------
||||| ||| |||||   ||||    |||| || || || ||  |||||||||||||||| ||  ||||||   | |||| ||||||||||||||||||||| | |  ||| |||  |||     ||  ||||    ||   |  ||  ||  |||   |    || || |                              
TGGCATGTCAGTTGAGACATATCAAGAAATTCTTGGAGAATGCAGGCATAAGTTGTTTGAAGTAAGGTCAAGGCGTCCAAAGCCACATTTGGATGATAAGgtatttcccttgaataatcttattgatttatttggg-atccacctatgttgatctagacatcaacttttatgtgtactctcaagggttcctatgctcctag

upper sequence: LOC_Os01g70950.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA19G39560.1 (Glycine max), 5'ss of exon 10
TGGCAAGTCTGTTGATGAATATGCTCAAATCCTGGGGGATTGTCGGCATAAGTTGTTTGATGTCCGGTCAAAAAGGCCAAGGCCACATTTGGATGATAAGgttcttgct-taaatg-tctggcacatccatttttttattgtcacataatgtacta-actacagtctattttag--------------------------------
||||| |||  ||||   ||||    |||| || || || ||  |||||||||||||||| ||  ||||||   | |||| |||||||||||||||||||||  || || | |||  |||     ||  ||||    ||   |  || |||  ||| ||| ||   | | |  |                                
TGGCATGTCAATTGAGACATATCAAGAAATTCTTGGAGAGTGCAGGCATAAGTTGTTTGAAGTAAGGTCAAGGCGTCCAAAGCCACATTTGGATGATAAGgtatttcctctgaataatcttatggatttatttggg-atccacctatgatgatctagacttcaacttttatgtgtactcccaactcaagggttcctatgctcctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58672383|gb|CK061069.1|CK061069
EST:     AGTTGTTTGATGTCCGGTCAAAAAGGCCAAGGCCACATTCGGATGATAAG                         GTTATTGTCTCATGGAATGGACTAGCTATATCTGCTTTTGCAAGAGCTTCC
genomic: AGTTGTTTGATGTCCGGTCAAAAAGGCCAAGGCCACATTTGGATGATAAGgttcttgctt ... tctattttagGTTATTGTCTCATGGAATGGACTAGCTATATCTGCTTTTGCAAGAGCTTCC
EST: gi|218481434|gb|FG954232.1|FG954232
EST:     GCCAAGGCCACATTTGGATGATAAG                         GTTATTGTCTCATGGAATGGACTAGCTATATCTGCTTTTGCAAGAGCTTCC
genomic: GCCAAGGCCACATTTGGATGATAAGgttcttgctt ... tctattttagGTTATTGTCTCATGGAATGGACTAGCTATATCTGCTTTTGCAAGAGCTTCC
EST: gi|218485810|gb|FG946182.1|FG946182
EST:     AGTTGTTTGATGTCCGGTCAAAAAGGCCAAGGCCACATTTGGATGATAAG                         GTTATTGTCTCATGGAATGGACTAGCTATATCTGCTTTTGCAAGAGCTTCC
genomic: AGTTGTTTGATGTCCGGTCAAAAAGGCCAAGGCCACATTTGGATGATAAGgttcttgctt ... tctattttagGTTATTGTCTCATGGAATGGACTAGCTATATCTGCTTTTGCAAGAGCTTCC