1 5' 3' | 2 5' 3' | 3 5' 3' |
TCAGTTCATTTCCTCGCATTGGCCCTATTGGAACAGGACAGATGGGGCAGACCATTTCTTTGTTGTGCCACATGATTTCGGAGCATGCTTCCATTATCAGgtaaatcaaggaatcattaaccttgaactattgtatatcaaatcatggaaacatacgatgagcctcatctacatactcaatacaacgaaatcattcagctccaatgtaccaattgttacccttttacatgttcaaccatgggatcttatttgcatttggtttttccatgattcag
species | Oryza sativa |
transcript | LOC_Os01g70190.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACCATTTCTTTGTTGTGCCACATGATTTCGGAGCATGCTTCCATTATCAG GAAGAGAAGGCCATTGAGCGGGGAATCCTGCCATTGCTTCGCCGTGCGACGEST: gi|29644462|gb|CB649469.1|CB649469
genomic: ACCATTTCTTTGTTGTGCCACATGATTTCGGAGCATGCTTCCATTATCAGgtaaatcaag ... catgattcagGAAGAGAAGGCCATTGAGCGGGGAATCCTGCCATTGCTTCGCCGTGCGACG
EST: ACCATTTCTTTGTTGTGCCACATGATTTCGGAGCATGCTTCCATTATCAC GAAGAGAAGGCCATTGAGCGGGGAATCCTGCCATTGCTTCGCCGTGCGACGEST: gi|569133|gb|D39982.1|D39982
genomic: ACCATTTCTTTGTTGTGCCACATGATTTCGGAGCATGCTTCCATTATCAGgtaaatcaag ... catgattcagGAAGAGAAGGCCATTGAGCGGGGAATCCTGCCATTGCTTCGCCGTGCGACG
EST: ACCATTTCTTTGTTGTGCCACATGATTTCGGAGCATGCTTCCATTATCAG GAAGAGAAGGCCATTGAGCGGGGAATCCTGCCATTGCTTCGCCGTG-GACGEST: gi|88737382|gb|CI760890.1|CI760890
genomic: ACCATTTCTTTGTTGTGCCACATGATTTCGGAGCATGCTTCCATTATCAGgtaaatcaag ... catgattcagGAAGAGAAGGCCATTGAGCGGGGAATCCTGCCATTGCTTCGCCGTGCGACG
EST: TTTGTTGTGCCACATGATTTCGGAGCATGCTTCCATTATCAG GAAGAGAAGGCCATTGAGCGGGGAATCCTGCCATTGCTTCGCCGTGCGACGEST: gi|29671328|gb|CB667603.1|CB667603
genomic: TTTGTTGTGCCACATGATTTCGGAGCATGCTTCCATTATCAGgtaaatcaag ... catgattcagGAAGAGAAGGCCATTGAGCGGGGAATCCTGCCATTGCTTCGCCGTGCGACG
EST: ACCATTTCTTTGTTGTGCCACATGATTTCGGAGCATGCTTCCATTATCAG GAAGAGAAGGCCATTGAGCGGGGAATCCTGCCATTGCTTCGCCGTGCGACGEST: gi|33796009|gb|CF323872.1|CF323872
genomic: ACCATTTCTTTGTTGTGCCACATGATTTCGGAGCATGCTTCCATTATCAGgtaaatcaag ... catgattcagGAAGAGAAGGCCATTGAGCGGGGAATCCTGCCATTGCTTCGCCGTGCGACG
EST: ACCATTTCTTTGTTGTGCCACATGATTTCGGAGCATGCTTCCATTATCAG GAAGAGAAGGCCATTGAGCGGGGAATCCTGCCATTGCTTCGCCGTGCGACG
genomic: ACCATTTCTTTGTTGTGCCACATGATTTCGGAGCATGCTTCCATTATCAGgtaaatcaag ... catgattcagGAAGAGAAGGCCATTGAGCGGGGAATCCTGCCATTGCTTCGCCGTGCGACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAGTTCATTTCCTCGCATTGGCCCTATTGGAACAGGACAGATGGGGCAGACCATTTCTTTGTTGTGCCACATGATTTCGGAGCATGCTTCCATTATCAGgtaaatcaaggaatcattaaccttgaactattgtatatcaaatcatggaaacatacgatgagcctcatctacatactcaatacaacgaaatcattcagctccaatgtaccaattgttacccttttacatgttcaaccatgggatcttatttgcatttggtttttccatgattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA