Sequence
atgc intronic sequence ATGC exonic sequenceTGAGCGGTCCGGAGAACCGGACTGCACTTACTACCTCAGGACTGGATTGTGCAGGTTCGGTATGAGCTGCAGGTTCAATCATCCTCAGGATAGGAATCTGgtgaatagatacttgacccaactgttcttatgtagcattattgtttcttatcacactgattcatggggtaatctcagtcaggatgtcatcattaggttgt...
Basic information
species | Oryza sativa |
transcript | LOC_Os01g68860.3 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os01g68860.3 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G087032_T04 (Zea mays), 5'ss of exon 2
TGAGCGGTCCGGAGAACCGGACTGCACTTACTACCTCAGGACTGGATTGTGCAGGTTCGGTATGAGCTGCAGGTTCAATCATCCTCAGGATAGGAATCTGgtgaatagat--acttgacccaactgttcttatgtagcattattgtttcttatcac-actgattcatggggtaatctcagtcaggatgtcatcat-taggttgt
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TGAGCGACCAGGTGAACCCGACTGCACTTACTATCTCAGGACTGGATTGTGTCGATTTGGCATGAGCTGCCGATTCAATCATCCTCCGGATAGGAATCTGgtgaatatccccgcctttccaaactgtgattatttgtcgt-attgctttgaatcaccagatgttttttccattatc-caatgtcattgttgttatgtacatt--
upper sequence: LOC_Os01g68860.3 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G107491_T03 (Zea mays), 5'ss of exon 2
TGAGCGGTCCGGAGAACCGGACTGCACTTACTACCTCAGGACTGGATTGTGCAGGTTCGGTATGAGCTGCAGGTTCAATCATCCTCAGGATAGGAATCTGgtgaatagatacttgacccaactgttcttatgtagcattattgtttcttatcacactgattcatggggtaatct--cagtcaggatgtcat---cattaggttgt
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TGAGCGACCAGGTGAACCGGACTGCACTTACTACCTCAGGACTGGATTGTGTCGATTTGGCATGAGCTGCAGGTTCAATCATCCTCCGGATAGGAATCTGgtgaatatccgcatttccttactctgattatgtg---tcattgctttgaaccaccagatgttttgccattatccgacattcttgttgttatgtacattagcag--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|29643926|gb|CB648933.1|CB648933EST: GCAGGTTCGGTATGAGCTGCAGGTTCAATCATCCTCAGGATAGGAATCTG GCTATTGCCTCTGCCAGAATGAAAGGAGAATACCCTGAGAGGATGGGGCAA
genomic: GCAGGTTCGGTATGAGCTGCAGGTTCAATCATCCTCAGGATAGGAATCTGgtgaatagat ... ttaatgttagGCTATTGCCTCTGCCAGAATGAAAGGAGAATACCCTGAGAGGATGGGGCAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGAGCGGTCCGGAGAACCGGACTGCACTTACTACCTCAGGACTGGATTGTGCAGGTTCGGTATGAGCTGCAGGTTCAATCATCCTCAGGATAGGAATCTGgtgaatagatacttgacccaactgttcttatgtagcattattgtttcttatcacactgattcatggggtaatctcagtcaggatgtcatcattaggttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG