1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CTGTCCAAGAAGGTGATAGATCTCGATGAGCTGAGGATGCTGGCTGCTCAGGGGGTCCCTGACGGCGCCGCCGTCCGTCCTACTGTGTGGAAGgtgctctcgatttgctcgtcttttcattaatctcggatcgttccgtaggtacagccgtacaggtttggaggttaggttcatgagcgtaatgacagtagat...
species | Oryza sativa |
transcript | LOC_Os01g68010.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTGCTCAGGGGGTCCCTGACGGCGCCGCCGTCCGTCCTACTGTGTGGAAG CTGTTGCTGGGCTATTTGCCGAGTGATCGTGCCCTGTGGGAGCAGGAGTTGEST: gi|88339196|gb|CI633767.1|CI633767
genomic: CTGCTCAGGGGGTCCCTGACGGCGCCGCCGTCCGTCCTACTGTGTGGAAGgtgctctcga ... agttttgcagCTGTTGCTGGGCTATTTGCCGAGTGATCGTGCCCTGTGGGAGCAGGAGTTG
EST: CTGCTCAGGGGGTCCCTGACGGCGCCGCCGTCCGTCCTACTGTGTGGAAG CTGTTGCTGGGCTATTTGCCGAGTGATCGTGCCCTGTGGGAGCAGGAGTTGEST: gi|38565749|gb|CK085202.1|CK085202
genomic: CTGCTCAGGGGGTCCCTGACGGCGCCGCCGTCCGTCCTACTGTGTGGAAGgtgctctcga ... agttttgcagCTGTTGCTGGGCTATTTGCCGAGTGATCGTGCCCTGTGGGAGCAGGAGTTG
EST: CTGCTCAGGGGGTCCCTGACGGCGCCGCCGTCCGTCCTACTGTGTGGAAG CTGTTGCTGGGCTATTTGCCGAGTGATCGTGCCCTGTGGGAGCAGGAGTTGEST: gi|88742952|gb|CI766460.1|CI766460
genomic: CTGCTCAGGGGGTCCCTGACGGCGCCGCCGTCCGTCCTACTGTGTGGAAGgtgctctcga ... agttttgcagCTGTTGCTGGGCTATTTGCCGAGTGATCGTGCCCTGTGGGAGCAGGAGTTG
EST: CTGCTCAGGGGGTCCCTGACGGCGCCGCCGTCCGTCCTACTGTGTGGAAG CTGTTGCTGGGCTATTTGCCGAGTGATCGTGCCCTGTGGGAGCAGGAGTTGEST: gi|88370350|gb|CI587740.1|CI587740
genomic: CTGCTCAGGGGGTCCCTGACGGCGCCGCCGTCCGTCCTACTGTGTGGAAGgtgctctcga ... agttttgcagCTGTTGCTGGGCTATTTGCCGAGTGATCGTGCCCTGTGGGAGCAGGAGTTG
EST: CTGCTCAGGGGGTCCCTGACGGCGCCGCCGTCCGTCCTACTGTGTGGAAG CTGTTGCTGGGCTATTTGCCGAGTGATCGTGCCCTGTGGGAGCAGGAGTTGEST: gi|88341320|gb|CI640077.1|CI640077
genomic: CTGCTCAGGGGGTCCCTGACGGCGCCGCCGTCCGTCCTACTGTGTGGAAGgtgctctcga ... agttttgcagCTGTTGCTGGGCTATTTGCCGAGTGATCGTGCCCTGTGGGAGCAGGAGTTG
EST: CTGCTCAGGGGGTCCCTGACGGCGCCGCCGTCCGTCCTACTGTGTGGAAG CTGTTGCTGGGCTATTTGCCGAGTGATCGTGCCCTGTGGGAGCAGGAGTTGEST: gi|9866162|gb|AU101912.1|AU101912
genomic: CTGCTCAGGGGGTCCCTGACGGCGCCGCCGTCCGTCCTACTGTGTGGAAGgtgctctcga ... agttttgcagCTGTTGCTGGGCTATTTGCCGAGTGATCGTGCCCTGTGGGAGCAGGAGTTG
EST: CTGCTCAGGGGGTCCCTGACGGCGCCGCCGTCCGTCCTACTGTGTGGAAG CTGTTGCTGGGCTATTTGCCGAGTGATCGTGCCCTGTGGGAGCAGGAGTTGEST: gi|88364426|gb|CI644504.1|CI644504
genomic: CTGCTCAGGGGGTCCCTGACGGCGCCGCCGTCCGTCCTACTGTGTGGAAGgtgctctcga ... agttttgcagCTGTTGCTGGGCTATTTGCCGAGTGATCGTGCCCTGTGGGAGCAGGAGTTG
EST: CTGCTCAGGGGGTCCCTGACGGCGCCGCCGTCCGTCCTACTGTGTGGAAG CTGTTGCTGGGCTATTTGCCGAGTGATCGTGCCCTGTGGGAGCAGGAGTTGEST: gi|88737467|gb|CI759348.1|CI759348
genomic: CTGCTCAGGGGGTCCCTGACGGCGCCGCCGTCCGTCCTACTGTGTGGAAGgtgctctcga ... agttttgcagCTGTTGCTGGGCTATTTGCCGAGTGATCGTGCCCTGTGGGAGCAGGAGTTG
EST: CTGCTCAGGGGGTCCCTGACGGCGCCGCCGTCCGTCCTACTGTGTGGAAG CTGTTGCTGGGCTATTTGCCGAGTGATCGTGCCCTGTGGGAGCAGGAGTTGEST: gi|58652950|gb|CK041630.1|CK041630
genomic: CTGCTCAGGGGGTCCCTGACGGCGCCGCCGTCCGTCCTACTGTGTGGAAGgtgctctcga ... agttttgcagCTGTTGCTGGGCTATTTGCCGAGTGATCGTGCCCTGTGGGAGCAGGAGTTG
EST: CTGCTCAGGGGGTCCCTGACGGCGCCGCCGTCCGTCCTACTGTGTGGAAG CTGTTGCTGGGCTATTTGCCGAGTGATCGTGCCCTGTGGGAGCAGGAGTTG
genomic: CTGCTCAGGGGGTCCCTGACGGCGCCGCCGTCCGTCCTACTGTGTGGAAGgtgctctcga ... agttttgcagCTGTTGCTGGGCTATTTGCCGAGTGATCGTGCCCTGTGGGAGCAGGAGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGTCCAAGAAGGTGATAGATCTCGATGAGCTGAGGATGCTGGCTGCTCAGGGGGTCCCTGACGGCGCCGCCGTCCGTCCTACTGTGTGGAAGgtgctctcgatttgctcgtcttttcattaatctcggatcgttccgtaggtacagccgtacaggtttggaggttaggttcatgagcgtaatgacagtagat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG