Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaagttcaagagaccgaggcgtttccaagtcaagtcaaggttttgacgtacttaatctcatttgtcattgtttgcag

Basic information

species Oryza sativa
transcript LOC_Os01g67134.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g67134.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G090738_T01 (Zea mays), 5'ss of exon 2
GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag--------------ttcaagagaccgaggcgtttccaagtcaagtcaaggttttgacgtacttaatctcatttgtcattgtttgcag
|| ||||| ||||||||||||||||||||||| |||  ||||||||||||||| |||||||||||| || |  ||| ||  |               |      ||    |   |||         |    |  |||||    ||  || ||  ||||  ||||||||||
GGGGGGTTCGTCAAGACCCAGAAGACCAATGCGTACTTCAAGCGTTTCCAAGTGAAGTTCAAGAGAAGGCGTGgtatgttcaacattctgttttctctcttgatgattttgttatttttgctatttgctgtgtgtttgatagtctacatttctcttgttcttgtttgcag

upper sequence: LOC_Os01g67134.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM5G815894_T03 (Zea mays), 5'ss of exon 2
GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaagttcaagagaccgaggcgtttccaa--gtcaagtcaaggttttgacgtacttaa------tctcatttgtcattgtttgcag
|| || |||||||||||||| ||||||||||| |||  |||||||||||| || |||||||||||| || |  ||| ||   ||          || |  |     |   |||  |  |  |  ||    | | ||      | ||  ||| | ||||||||||
GGGGGTTTTGTCAAGACCCACAAGACCAATGCGTACTTCAAGCGTTTCCAGGTGAAGTTCAAGAGAAGGCGCGgtatgttttgtctgctcttttgatgtttgcattactatcatttttatttcctgtttgattgaaagcctttttctattgaccttgtttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58658098|gb|CK046778.1|CK046778
EST:     GACCAATGCCTACTACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|88718553|gb|CI742063.1|CI742063
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|88315543|gb|CI615415.1|CI615415
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAAACAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|218502752|gb|FG953444.1|FG953444
EST:     CAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: CAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|58604817|gb|CK015345.1|CK015345
EST:     GACCAATGCCTACTACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|33689831|gb|CF318070.1|CF318070
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|11863316|gb|AU065822.2|AU065822
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|88406602|gb|CI599095.1|CI599095
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|33799084|gb|CF325402.1|CF325402
EST:     AAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: AAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|88388750|gb|CI592638.1|CI592638
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|88731096|gb|CI754709.1|CI754709
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|33654169|gb|CF276783.1|CF276783
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|88316468|gb|CI621707.1|CI621707
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|88362740|gb|CI608889.1|CI608889
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|29657555|gb|CB653830.1|CB653830
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|88352341|gb|CI615595.1|CI615595
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|55408323|gb|CV720699.1|CV720699
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|88317346|gb|CI627995.1|CI627995
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|88726027|gb|CI749682.1|CI749682
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|33820922|gb|CF336266.1|CF336266
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|33693282|gb|CF321521.1|CF321521
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCATGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|88718895|gb|CI742405.1|CI742405
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|88760193|gb|CI769749.1|CI769749
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|88762360|gb|CI771916.1|CI771916
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|11026266|gb|AU162867.1|AU162867
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|55409447|gb|CV721823.1|CV721823
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|11565253|gb|AU165889.1|AU165889
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|33689690|gb|CF317929.1|CF317929
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|58686254|gb|CK074941.1|CK074941
EST:     GACCAATGCCTACTACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|88716726|gb|CI740236.1|CI740236
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|29687293|gb|CB683568.1|CB683568
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGGCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|33664208|gb|CF295175.1|CF295175
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|86831851|gb|CI303291.1|CI303291
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|88693462|gb|CI737037.1|CI737037
EST:     GAACAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|32948464|gb|BP185036.1|BP185036
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|33690075|gb|CF318314.1|CF318314
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|9884543|gb|BE607376.1|BE607376
EST:     CAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: CAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|33823119|gb|CF337362.1|CF337362
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|88726436|gb|CI750091.1|CI750091
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|32948110|gb|BP184682.1|BP184682
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|117251436|gb|CT844165.1|CT844165
EST:     GACCAATGCCTACTACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|33810868|gb|CF331325.1|CF331325
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|86905628|gb|CI287193.1|CI287193
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|88356667|gb|CI617750.1|CI617750
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|33688829|gb|CF317068.1|CF317068
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|86830607|gb|CI292049.1|CI292049
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|86596791|gb|CI286704.1|CI286704
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|88761552|gb|CI771108.1|CI771108
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|58602021|gb|CK012549.1|CK012549
EST:     GACCAATGCCTACTACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|58599223|gb|CK009751.1|CK009751
EST:     GACCAATGCCTACTACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|88745455|gb|CI768815.1|CI768815
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|33823697|gb|CF337654.1|CF337654
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|33690461|gb|CF318700.1|CF318700
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|163917751|gb|EG711285.1|EG711285
EST:     GACCAATGCCTACTACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|88385545|gb|CI564205.1|CI564205
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|88393713|gb|CI621208.1|CI621208
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|58591763|gb|CF990071.1|CF990071
EST:     GACCAATGCCTACTACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|88731290|gb|CI754903.1|CI754903
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|58593862|gb|CF992170.1|CF992170
EST:     GACCAATGCCTACTACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|38568588|gb|CD670803.1|CD670803
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|88360056|gb|CI610170.1|CI610170
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|33664336|gb|CF295303.1|CF295303
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|88736162|gb|CI759670.1|CI759670
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|88393147|gb|CI616631.1|CI616631
EST:     GACCAATGCCTACCAAAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|87023897|gb|CI288250.1|CI288250
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|88736065|gb|CI759573.1|CI759573
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|4878238|gb|AU062537.1|AU062537
EST:     GACCAATGCCTACCACAAGCNTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|88739370|gb|CI762878.1|CI762878
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|88729308|gb|CI752818.1|CI752818
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|11025899|gb|AU162500.1|AU162500
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|88726414|gb|CI750069.1|CI750069
EST:     GAACAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|87006113|gb|CI291309.1|CI291309
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|88734369|gb|CI757877.1|CI757877
EST:     GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|58660855|gb|CK049535.1|CK049535
EST:     GACCAATGCCTACTACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
EST: gi|33693846|gb|CF322085.1|CF322085
EST:     GGCCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCATTATACGGAGGC                         AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA
genomic: GACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 73 (upstream exon), 74 (downstream exon)
Score: 205

GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaag ... ttgtttgcagAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCgtaagtcaagttcaagagaccgaggcgtttccaagtcaagtcaaggttttgacgtacttaatctcatttgtcattgtttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA