1 5' 3' | 2 5' 3' | 3 5' 3' |
AATTGGTGGAGGACTGCCGTAAATGTTGTACAGAGGATTCAGATGATTCTATCAGCAAGgtatgacagaatgaactatgaagctcaatgaattaagggtgacaactgattttgcttctcataatatgcaatcataacttttttttcttttatgggttta...
species | Oryza sativa |
transcript | LOC_Os01g66960.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTAAATGTTGTACAGAGGATTCAGATGATTCTATCAGCAAG CTCACATTCTCTGGTGCAATTATTGAGGTGTGCATGAGAAAGCTTGTGTTTEST: gi|88241367|gb|CI241216.1|CI241216
genomic: GTAAATGTTGTACAGAGGATTCAGATGATTCTATCAGCAAGgtatgacaga ... tctattgcagCTCACATTCTCTGGTGCAATTATTGAGGTGTGCATGAGAAAGCTTGTGTTT
EST: AGGACTGCCGTAAATGTTGTACAGAGGATTCAGATGATTCTATCAGCAAG CTCACATTCTCTGGTGCAATTATTGAGGTGTGCATGAGAAAGCTTGTGTTTEST: gi|29667198|gb|CB663473.1|CB663473
genomic: AGGACTGCCGTAAATGTTGTACAGAGGATTCAGATGATTCTATCAGCAAGgtatgacaga ... tctattgcagCTCACATTCTCTGGTGCAATTATTGAGGTGTGCATGAGAAAGCTTGTGTTT
EST: AGGACTGCCGTAAATGTTGTACAGAGGATTCAGATGATTCTATCAGCAAG CTCACATTCTCTGGTGCAATTATTGAGGTGTGCATGAGAAAGCTTGTGTTTEST: gi|27577793|gb|CB000488.1|CB000488
genomic: AGGACTGCCGTAAATGTTGTACAGAGGATTCAGATGATTCTATCAGCAAGgtatgacaga ... tctattgcagCTCACATTCTCTGGTGCAATTATTGAGGTGTGCATGAGAAAGCTTGTGTTT
EST: AGGACTGCCCTTAATGTTGTACAGAGGATTCAGATGATTCTATCAGCAAG CTCACATTCTCTGGTGCAATTATTGAGGTGTGCATGAGAAAGCTTGTGTTTEST: gi|88208243|gb|CI208092.1|CI208092
genomic: AGGACTGCCGTAAATGTTGTACAGAGGATTCAGATGATTCTATCAGCAAGgtatgacaga ... tctattgcagCTCACATTCTCTGGTGCAATTATTGAGGTGTGCATGAGAAAGCTTGTGTTT
EST: CAGAGGATTCAGATGATTCTATCAGCAAG CTCACATTCTCTGGTGCAATTATTGAGGTGTGCATGAGAAAGCTTGTGTTTEST: gi|87020481|gb|CI263344.1|CI263344
genomic: CAGAGGATTCAGATGATTCTATCAGCAAGgtatgacaga ... tctattgcagCTCACATTCTCTGGTGCAATTATTGAGGTGTGCATGAGAAAGCTTGTGTTT
EST: AAATGTTGTACAGAGGATTCAGATGATTCTATCAGCAAG CTCACATTCTCTGGTGCAATTATTGAGGTGTGCATGAGAAAGCTTGTGTTT
genomic: AAATGTTGTACAGAGGATTCAGATGATTCTATCAGCAAGgtatgacaga ... tctattgcagCTCACATTCTCTGGTGCAATTATTGAGGTGTGCATGAGAAAGCTTGTGTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTGGTGGAGGACTGCCGTAAATGTTGTACAGAGGATTCAGATGATTCTATCAGCAAGgtatgacagaatgaactatgaagctcaatgaattaagggtgacaactgattttgcttctcataatatgcaatcataacttttttttcttttatgggttta
- - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG