1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
ACGCTCAAGAGAAAGAACCAGAAGGCGCTATTCGAGGCTCTCCTCAAGGTGAAAGAAGgtactagccttctctgtacagttcatgctgttcattgaaaaaggaacagatgtttctcctttcaacctagcttagaccaagctgtaaacattgtagttatgtaactgtcgcatcattttttcctgatatgcatagagaaaggatgattctttgcacaaacatgagctgtagatttctgtccatttcctgtccgatgcag
species | Oryza sativa |
transcript | LOC_Os01g66510.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAGAAAGAACCAGAAGGCGCTATTCGAGGCTCTCCTCAAGGTGAAAGAAG AGCTGATGCTTCTGGEST: gi|88421047|gb|CI566888.1|CI566888
genomic: GAGAAAGAACCAGAAGGCGCTATTCGAGGCTCTCCTCAAGGTGAAAGAAGgtactagcct ... tccgatgcagAGCTGATGCTTCTGG
EST: GAGAAAGAAACAGAAGGCGCTATTCGAGGCTCTCCTCAAGGTGAAAGAAG AGCTGATGCTTCTGGGGTTCATCTCCCTGCTGCTGACGGTGTCCCAAGGGAEST: gi|88398045|gb|CI585548.1|CI585548
genomic: GAGAAAGAACCAGAAGGCGCTATTCGAGGCTCTCCTCAAGGTGAAAGAAGgtactagcct ... tccgatgcagAGCTGATGCTTCTGGGGTTCATCTCCCTGCTGCTGACGGTGTCCCAAGGGA
EST: GAGAAAGAACCAGAAGGCGCTATTCGAGGCTCTCCTCAAGGTGAAAGAAG AGCTGATGCTTCTGGGGTTCATCTCCCTGCTGCTGACGGTGTCCCAAGGGA
genomic: GAGAAAGAACCAGAAGGCGCTATTCGAGGCTCTCCTCAAGGTGAAAGAAGgtactagcct ... tccgatgcagAGCTGATGCTTCTGGGGTTCATCTCCCTGCTGCTGACGGTGTCCCAAGGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACGCTCAAGAGAAAGAACCAGAAGGCGCTATTCGAGGCTCTCCTCAAGGTGAAAGAAGgtactagccttctctgtacagttcatgctgttcattgaaaaaggaacagatgtttctcctttcaacctagcttagaccaagctgtaaacattgtagttatgtaactgtcgcatcattttttcctgatatgcatagagaaaggatgattctttgcacaaacatgagctgtagatttctgtccatttcctgtccgatgcag
- - - - - AAAGAA
- - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG