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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATGTGTTTGGTCTCATTGCTGCGCGCGACACGATTGACCGCAACCGCATTATGATCTTCAACCGCACCAGGGATAACTGCCAAACAATTACTAAAGAGgtgcactttatttcctattgtacatcgttttatatttcttccttttgcataattaaatcatgatttgtgcgtggacacacattgtgctactagtagtttt...

Basic information

species Oryza sativa
transcript LOC_Os01g66230.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9865608|gb|AU101358.1|AU101358
EST:     TATGATCTTCAACCGGCACCAGGNATAACTGCCAACCAATTACTAAAGAG                         GATCGATATTTATTACTGACAGGTCCTACGCGTGCTGTTGTGGTATCTGAC
genomic: TATGATCTTCAACC-GCACCAGGGATAACTGCCAAACAATTACTAAAGAGgtgcacttta ... ttgcatgcagGATCGATATTTATTACTGACAGGTCCTACGCGTGCTGTTGTGGTATCTGAC
EST: gi|1632536|gb|C20265.1|C20265
EST:     TTATGATCTTCAACCGCACCAGGGATAACTGCCAAACAATTACTAAAGAG                         GATCGATATTTATTACTGACAGGTCCTACGCGTGCTGTTGTGGTATCTGAC
genomic: TTATGATCTTCAACCGCACCAGGGATAACTGCCAAACAATTACTAAAGAGgtgcacttta ... ttgcatgcagGATCGATATTTATTACTGACAGGTCCTACGCGTGCTGTTGTGGTATCTGAC