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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCGGCAAGGCGCCCAAGGGCGAGAAGACCAACTGGATCATGCACGAGTACCGCCTCGCCGACGTCGACCGCTCCGCCCGCAAGAAGAACAGCCTCAGGgtaagcaaaaaccacacccaagattccatcactaaattcattactaaatctgtgttcatcgtgattattgattaatttagtcacctaattattcgcccaa...

Basic information

species Oryza sativa
transcript LOC_Os01g66120.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g66120.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G014653_T02 (Zea mays), 5'ss of exon 1
CGCCGGCAAGGCGCCCAAGGGCGAGAAGACCAACTGGATCATGCACGAGTACCGCCTCGCCGACGTCGACCGCTCCGCCCGCAAGAAGAACAGCCTCAGGgtaagcaaaaaccacacccaagattccatcactaaattcattactaa-atctgtgttcatcgtgattattgattaattta-gtcacctaattattcgcccaa--
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| || || | | ||   |   || ||  |   | | ||       ||   || ||     |  |   |  | ||   |  |     |   |  |  ||  
CGCCGGCAAGGCGCCCAAGGGCGAGAAGACCAACTGGATCATGCACGAGTACCGCCTCGCCGACGTCGACCGCTCGGCGCGCAAGAAGAACAGCCTCAGGgtaag-aacaagcgctcc---gccgccgtccgtccgtccgttggcgtcgtcaccgtccaaatcaaacaaaaagaacttggcgataatgtgtcgctttcgtaatg

upper sequence: LOC_Os01g66120.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA04G42800.1 (Glycine max), 5'ss of exon 2
CGCCGGCAAGGCGCCCAAGGGCGAGAAGACCAACTGGATCATGCACGAGTACCGCCTCGCCGACGTCGACCGCTCCGCCCGCAAGAAGAACAGCCTCAGGgtaagcaaaaaccacacccaagattccatcactaaattcattactaaatctgtgttcatcgtgattattgattaatttagtcacctaattattcgcccaa----
||| || || || || || || || |||| ||| ||||||||||||||||| || |||||||| || || |||||||  ||||| ||||||||||| ||||||   | | ||   |   | ||| |   | ||   |||      ||   | |    || | ||| ||||  | |  |    || |     |       |    
CGCAGGGAAAGCTCCGAAAGGGGACAAGAGCAATTGGATCATGCACGAGTATCGTCTCGCCGATGTAGATCGCTCCGTTCGCAAAAAGAACAGCCTAAGGgtacatacatacatgaatgatgatgcatgccct---ttctagttcaagattattaggatag-gataattgcatgaaattacgactttgccctcaagttgaagct

upper sequence: LOC_Os01g66120.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA02G26480.1 (Glycine max), 5'ss of exon 2
CGCCGGCAAGGCGCCCAAGGGCGAGAAGACCAACTGGATCATGCACGAGTACCGCCTCGCCGACGTCGACCGCTCCGCCCGCAAGAAGAACAGCCTCAGGgtaagcaaaaac-cacacccaagattc-catcactaaattcattactaaatctgtgtt-catcgtgattattgattaatttagtcacctaattattcgcccaa
|||||| || ||||||||||| | ||| || |||||||||||||||||||| || ||||||||||| || || || |  ||||| ||||||||| | ||||||   |  |     | |||    ||| | ||||||  |  |  ||  |||     || || ||    | |   ||     | |||||   |||  |    | 
CGCCGGAAAAGCGCCCAAGGGAGTGAAAACTAACTGGATCATGCACGAGTATCGTCTCGCCGACGTGGATCGTTCGGTTCGCAAAAAGAACAGCTTAAGGgtatataccagtatgcgcccttttttctcttcacta--tcgaggacataatagacatttcaacgcacatttacctttcgaaaatcaccgttttaccctttaa-

upper sequence: LOC_Os01g66120.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA06G11970.1 (Glycine max), 5'ss of exon 2
CGCCGGCAAGGCGCCCAAGGGCGAGAAGACCAACTGGATCATGCACGAGTACCGCCTCGCCGACGTCGACCGCTCCGCCCGCAAGAAGAACAGCCTCAGGgtaagcaaaaaccacacccaag---attccatcactaa-attcattactaaatctgtgttcat-cgtgattattgattaatttagtcacctaattattcgcccaa
||| || || || || || || || || | ||| ||||||||||||||||| || ||||| ||||| || |||||||  ||||| ||||||| ||| ||||||   | |  ||  ||        | | ||  | ||    ||   | ||   || ||| | | ||   | || |  | |        ||    | || |     
CGCAGGGAAAGCTCCTAAAGGGGACAAAAGCAATTGGATCATGCACGAGTATCGTCTCGCAGACGTAGATCGCTCCGTTCGCAAAAAGAACACCCTAAGGgtatatacactccgtacttctttctagttcaagattattgctcgaaattacgactttgtccctacgctctcatcggctgaggataagtccaggattttgg-----

upper sequence: LOC_Os01g66120.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA14G24220.1 (Glycine max), 5'ss of exon 2
CGCCGGCAAGGCGCCCAAGGGCGAGAAGACCAACTGGATCATGCACGAGTACCGCCTCGCCGACGTCGACCGCTCCGCCCGCAAGAAGAACAGCCTCAGGgtaagcaaaaaccacacccaagattccatcactaaattcattactaaatctgtgtt-catcgtgattattgattaatttagtcacctaattattcgcccaa----
||| || || ||||||||||| ||||| || |||||||||||||||||||| || || || ||||| || || ||||  ||||| ||||||||| | ||||||         | |         | ||  || ||   ||| |   |   |  ||  ||     ||||    |  |  |   |   | | | ||  ||  |    
CGCTGGAAAAGCGCCCAAGGGAGAGAAAACTAACTGGATCATGCACGAGTATCGTCTTGCAGACGTGGATCGTTCCGTTCGCAAAAAGAACAGCTTAAGGgtatat-----tcccctttctctcttcaatacgaaggacataatggacatttcgtggcacaaatattacctttcgaaatcaccgttttacttttacccttaaata

upper sequence: LOC_Os01g66120.1 (Oryza sativa), 5'ss of exon 2
lower sequence: AT1G01720.1 (Arabidopsis thaliana), 5'ss of exon 2
CGCCGGCAAGGCGCCCAAGGGCGAGAAGACCAACTGGATCATGCACGAGTACCGCCTCGCCGACGTCGACCGCTCCGCCCGCAAGAAGAA---CAGCCTCAGGgtaagcaaaaaccacacccaagattccatcactaaattcattactaaatctgtgttcatcgtgattattgattaatttagtcacctaattattcgcccaa
   |||||| || || ||||| ||||| ||||| |||||||||||||||||||| ||||||||||| ||||| ||||  |||||||||||    || ||||||||| |    || || | |  |  |  ||||  |   |  ||  ||   ||||| |            |  ||| | | |      |   | || ||||| 
---CGGCAAAGCTCCAAAGGGAGAGAAAACCAATTGGATCATGCACGAGTACCGTCTCGCCGACGTTGACCGGTCCGTTCGCAAGAAGAAGAATAGTCTCAGGgtatg---gaatcagatctgat-tcacatctttgtttcaatctcttgttctgtttctg--------gtaaattgaatcaacggtgttgatttttgcccag

upper sequence: LOC_Os01g66120.1 (Oryza sativa), 5'ss of exon 2
lower sequence: Vv07s0031g02610.t01 (Vitis vinifera), 5'ss of exon 2
CGCCGGCAAGGCGCCCAAGGGCGAGAAGACCAACTGGATCATGCACGAGTACCGCCTCGCCGACGTCGACCGCTCCGCCCGCAAGAAGAACAGCCTCAGGgtaag-caaaaaccacacccaagattccatcactaaattcattactaaatctgtgttcatcgtgattattgattaatttagtc-----acctaattattcgcccaa---
 |||||||| || ||||  || |  || ||||| ||||||||||||||||| ||||||||| | || || || |||||| ||||||| |||| | | |||||| |     ||    |  | | |||  |    |  ||| |||| | ||         |    || |  || ||  |||  |      |  | ||||||  |       
TGCCGGCAAAGCTCCCAGAGGTGTCAAAACCAATTGGATCATGCACGAGTATCGCCTCGCCAATGTTGATCGATCCGCCGGCAAGAAAAACAACTTAAGGgtacgattgtaattctatactacattaaagatatttatttattatttaaaaaaaaaagaaaaagagtgatggttctttttattgatatatattattattgactttgcag

upper sequence: LOC_Os01g66120.1 (Oryza sativa), 5'ss of exon 2
lower sequence: PP1S164_25V6.1 (Physcomitrella patens), 5'ss of exon 3
CGCCGGCAAGGCGCCCAAGGGCGAGAAGACCAACTGGATCATGCACGAGTACCGCCTCGCCGACGTCGACCG---CTCCGCCCGCAAGAA--GAACAGCCTCAGGgtaagcaaaaaccaca---cccaagattccat-cactaaattcattactaaatctgtgttcatcgtgattattgattaatttagtcacctaattattcgcccaa--------------------------------------------------------------------------
          || || ||||||||||| || |||||||||||||||||||| |||||||| || |  | |     |||| | |   |     |||    |||   |  || |    |  ||   ||| |  |  ||| |||||   | |   || | |    | |  |  |||  ||| |  |      |  |  | ||   |  | |                                                                           
---------AGCACCAAAGGGCGAGAAAACGAACTGGATCATGCACGAGTATCGCCTCGCTGAAGGTGTCTCGACCTCCACTCATCATCCTCGAAGGAACTCTTCGCGAgtatgtcctccattcccccacctcacatgcactaccgttaggtcttattaaaggctgtttatgagaatttaggaccaggttttcgaagttgaacttctagggtttctgagaacatgtccaacgtagtctcgagaattttcctcctcaccttttgactaaattttggtaatgcag

upper sequence: LOC_Os01g66120.1 (Oryza sativa), 5'ss of exon 2
lower sequence: PP1S117_16V6.1 (Physcomitrella patens), 5'ss of exon 2
CGCCGGCAAGGCGCCCAAGGGCGAGAAGACCAACTGGATCATGCACGAGTACCGCCTCGCCGA-----CGTCGACCGCTCCGC-CCGCAAGAAGAACAGCCTCA---GGgtaagcaaaaaccacacccaagattccatcac---taaattcattactaaatctgtgttcatcgtgattattga-ttaattta-gtcacctaattattcgcccaa---------------------------
         ||| |||||||||||||| ||||||||||||||||||||||| ||||| || ||      |||| || || | | ||   |      | ||  |    ||||| | | |    ||| |  |     |||||    ||||    |   | |  ||  |||     |||||  ||| |  || || ||  |||    |   ||  |                            
---------GGCCCCCAAGGGCGAGAAAACCAACTGGATCATGCACGAGTATCGCCTTGCTGAAGGGGTGTCGCCCTCTGCTCACCATCACCGCCGCGGCTCCTTGCGGgtatgtatagcgtacatctcactcaacatcaggagtaaacctgtcgatcatgcta-gttgcctatgattcctgaatcgatatatgttgcctgtggaccagcgaatgacgcccgtctaattttgtggctgcag

upper sequence: LOC_Os01g66120.1 (Oryza sativa), 5'ss of exon 2
lower sequence: PP1S259_83V6.1 (Physcomitrella patens), 5'ss of exon 2
CGCCGGCAAGGCGCCCAAGGGCGAGAAGACCAACTGGATCATGCACGAGTACCGCCTCGCCGACGTCGAC---CGCTCCGCCCGCAAGAAGAACAGC--CTCAGGgtaagcaaaaaccacacccaagattcca-tcactaaattcattactaaatctgtgt-tcatcgtgattattgattaatttagtcacctaattattc-gcccaa--------------------------------------------
          || || |||||||||||||| |||||||||||||||||||| || || || || |  | |   | | |||| ||| |  |   | ||  |||   |   | |   |  || ||      |||| |  || |  ||   | | | |||| || ||||    ||   | ||   | |||  | | |  ||| |    |||                                            
---------AGCCCCAAAGGGCGAGAAGACAAACTGGATCATGCACGAGTATCGTCTTGCTGAAGGTGTCTCGCCCCCCGCACGCCATCACCGCCGCGGCTCGCTGAGGgtatgtatgactcctcgatctccaattgctcacctcg--agtgattctgcgtatcatgccaatcgctcatgtttctagg-atccatctatgctattcaaggtaaatggtgatctgtggactgacatctagtttgagagtgcag

upper sequence: LOC_Os01g66120.1 (Oryza sativa), 5'ss of exon 2
lower sequence: PP1S15_200V6.1 (Physcomitrella patens), 5'ss of exon 2
CGCCGGCAAGGCGCCCAAGGGCGAGAAGACCAACTGGATCATGCACGAGTACCGCCTCGCCGACGTCGACCGCTCCGCCCGCAAGAA-----GAACAGCCTCAGGgtaagcaaaaaccacacccaagattccatcactaa-attcattactaaatctgtgt-tcatcgtgattattgattaattt---agtcacctaattattc---gcccaa-----------------------------------------------------------------------------
         ||| ||||||||||||||||| ||||||||||||||||||||||||||||| || | || |    || ||   ||  |     |||  | |||   |   | |    |  ||  |     | | |||| || ||||||  |      |  || |  | ||| ||  |||   | ||   | | ||| || |   |   |  | |                                                                             
---------GGCACCCAAGGGCGAGAAGACGAACTGGATCATGCACGAGTACCGCCTCGCGGAAGGCGTCTCAACCTCCAATAACCATCACCGAAGGGGCTCTCTGCGTgtatgtcctgcattctc--ctacctcacaaacattcatgtccgctattacgtattttggtgttttctgaaggactttcgattaacccaactcccctacgttcgatttctcttgtttcgtggaacatccacaactatgttaggacgctccgatctgaacgtaacctacatttggtgatgcag

upper sequence: LOC_Os01g66120.1 (Oryza sativa), 5'ss of exon 2
lower sequence: EFJ36823 (Selaginella moellendorffii), 5'ss of exon 1
---CGCCGGCAAGGCGCCCAAGGGCGAGAAGACCAACTGGATCATGCACGAGTACCGCCTCGCCGACGTCGACCGCTCCGCCCGCAAGAAGAACAGCCTCAGGgtaagcaaaaaccacacccaaga-ttccatcactaaattcattactaaatctgtgttcatcgtgattattgattaatttagtc--acctaattattcgcccaa---------------------------------------------
   |   ||||  ||||| | ||| | ||||||||||||||| |||||||||||||| || | ||||     || |    | |||  ||||    ||  ||| |||||    ||   | || |  | || ||| | |    |   || |           ||     |  |   |  ||   ||    | || || | | |    |                                             
CTACAAAGGCAGAGCGCCGAGGGGGGCGAAGACCAACTGGATTATGCACGAGTACCGTCTAGTCGACAATCCCCACAAGCCTCGCCGGAAGG---GCTCCAGAgtaagtttcaattcctccaagtagttgcataagtc--ctgcatattggggaaaaaaacaaaaaaaaaaaaaaaaaagagagctcgagctcatgagtggtattaaaaaccgatggcttactttggcaagctgttcttctttcgttgcag

upper sequence: LOC_Os01g66120.1 (Oryza sativa), 5'ss of exon 2
lower sequence: EFJ27849 (Selaginella moellendorffii), 5'ss of exon 1
---CGCCGGCAAGGCGCCCAAGGGCGAGAAGACCAACTGGATCATGCACGAGTACCGCCTCGCCGACGTCGACCGCTCCGCCCGCAAGAAGAACAGCCTCAGGgtaagcaaaaaccacacccaaga-ttccatcactaaattcattactaaatctgtgttcatcgtgattattgattaatttagtcacctaattattcgcccaa--------------------------------------------------------
   |   ||||  ||||| | ||| | ||||||||||||||| |||||||||||||| || | ||||     || |    | |||  ||||    ||  ||| |||||    ||   | || |  | || |||| |     |   || |           ||     |  |   |  ||   |        |      || |                                                          
CTACAAAGGCAGAGCGCCGAGGGGGGCGAAGACCAACTGGATTATGCACGAGTACCGTCTAGTCGACAATCCCCACAAGCCTCGCCGGAAGG---GCTCCAGAgtaagtttcaattcctccaagtagttgcatc-cagtcctgcatattggggaaaaaaacaaaaaaaacaaaaaaaaaaaaaaaagaaagagcgagagctcgtgagtggtattaaaaaccgatggcttactttggcaagctgttcttctttcgttgcag

upper sequence: LOC_Os01g66120.1 (Oryza sativa), 5'ss of exon 2
lower sequence: EFJ20531 (Selaginella moellendorffii), 5'ss of exon 1
CGCCGGCAAGGCGCCCAAGGGCGAGAAGACCAACTGGATCATGCACGAGTACCGCCTCGCCGACGTC--------GACCGCT-------------CCGCCCGCAAGAAGAACAGCCTCAGGgtaagcaaaaaccacacccaagattccatcactaaattcattactaaatctgtgttcatcgtgattattgattaatt--tagtcacctaattattcgcccaa
                         ||||| || |||||||||||||||||||||||||||||   |        | ||||              ||   ||||||||       ||||||||||| | || |  |  |   |  ||  ||| |   ||| ||  |  || | | |     |  ||  | ||||   |  |      |   ||  | ||   |
---------------------ATCCAAGACGAATTGGATCATGCACGAGTACCGCCTCGCCGATAGCAGCGCCAAGGCCGCCGCAGCGATTCCGGCCATGCGCAAGAAAGGATCGCTCAGGgtaagaagaatctccgtcatcgcctcagtca-tggcttctttcttgcat-tctttgtggtgaaatcctcgatttcctggtgaaattcgcgtttcttgcttga

upper sequence: LOC_Os01g66120.1 (Oryza sativa), 5'ss of exon 2
lower sequence: EFJ28600 (Selaginella moellendorffii), 5'ss of exon 1
CGCCGGCAAGGCGCCCAAGGGCGAGAAGACCAACTGGATCATGCACGAGTACCGCCTCGCCGACGTC--------GACCGCT-------------CCGCCCGCAAGAAGAACAGCCTCAGGgtaagcaaaaaccacacccaagattccatcactaaattcattactaaatctgtgttcatcgtgattattgattaatt--tagtcacctaattattcgcccaa
                         ||||| || |||||||||||||||||||||||||||||   |        | ||||              ||   ||||||||       ||||||||||| | || |  | ||   |  ||  ||| |   ||| ||  |  || | | |     |  ||  | ||||   |  |      |   ||  | ||   |
---------------------ATCCAAGACGAATTGGATCATGCACGAGTACCGCCTCGCCGATAGCAGCGCCAAGGCCGCCGCAGCGATTCCGGCCATGCGCAAGAAAGGATCGCTCAGGgtaagaagaatctccgccatcgcctcggtca-tggcttctttcttgcat-tctttgtggtgaaatcctcgatttcctggtgaaattcgcgtttcttgcttga

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38480683|gb|CF964772.1|CF964772
EST:     ACCGCCTCGCCGACGTCGACCGCTCCGCCCGCAAGAAGAACAGCCTCAGG                         TTGGATGATTGGGTGCTGTGCCGGATTTACAACAAGAAGGGCGGGCTGGAG
genomic: ACCGCCTCGCCGACGTCGACCGCTCCGCCCGCAAGAAGAACAGCCTCAGGgtaagcaaaa ... attggtgcagTTGGATGATTGGGTGCTGTGCCGGATTTACAACAAGAAGGGCGGGCTGGAG
EST: gi|42793913|gb|AB117812.1|AB117812
EST:     ACCGCCTCGCCGACGTCGACCGCTCCGCCCGCAAGAAGAACAGCCTCAGG                         TTGGATGATTGGGTGCTGTGCCNGATTTACAACAAGAAGGGCGGGCTGGGA
genomic: ACCGCCTCGCCGACGTCGACCGCTCCGCCCGCAAGAAGAACAGCCTCAGGgtaagcaaaa ... attggtgcagTTGGATGATTGGGTGCTGTGCCGGATTTACAACAAGAAGGGCGGGCTGG-A
EST: gi|58595213|gb|CF993521.1|CF993521
EST:     ACCGCCTCGCCGACGTCGACCGCTCCGCCCGCAAGAAGAACAGCCTCAGG                         TTGGATGATTGGGTGCTGTGCCGGATTTACAACAAGAAGGGCGGGCTGGAG
genomic: ACCGCCTCGCCGACGTCGACCGCTCCGCCCGCAAGAAGAACAGCCTCAGGgtaagcaaaa ... attggtgcagTTGGATGATTGGGTGCTGTGCCGGATTTACAACAAGAAGGGCGGGCTGGAG
EST: gi|58589527|gb|CF987835.1|CF987835
EST:     ACCGCCTCGCCGACGTCGACCGCTCCGCCCGCAAGAAGAACAGCCTCAGG                         TTGGATGATTGGGTGCTGTGCCGGATTTACAACA
genomic: ACCGCCTCGCCGACGTCGACCGCTCCGCCCGCAAGAAGAACAGCCTCAGGgtaagcaaaa ... attggtgcagTTGGATGATTGGGTGCTGTGCCGGATTTACAACA
EST: gi|15008325|gb|AU222713.1|AU222713
EST:     ACCGCCTCGCCGACGTCGACCGCTCCGCCCGCAAGAAGAACAGCCTCAGG                         TTGGATGATTGGGTGCTGTGCCGGATTTACAACAAGAAGGGCGGGCTGGAG
genomic: ACCGCCTCGCCGACGTCGACCGCTCCGCCCGCAAGAAGAACAGCCTCAGGgtaagcaaaa ... attggtgcagTTGGATGATTGGGTGCTGTGCCGGATTTACAACAAGAAGGGCGGGCTGGAG
EST: gi|58589510|gb|CF987818.1|CF987818
EST:     ACCGCCTCGCCGACGTCGACCGCTCCGCCCGCAAGAAGAACAGCCTCAGG                         TCGGATGATCGGGTGCTGTGCCGGATTTACAACAAGAAGGGCGGGCTGGAG
genomic: ACCGCCTCGCCGACGTCGACCGCTCCGCCCGCAAGAAGAACAGCCTCAGGgtaagcaaaa ... attggtgcagTTGGATGATTGGGTGCTGTGCCGGATTTACAACAAGAAGGGCGGGCTGGAG
EST: gi|58593932|gb|CF992240.1|CF992240
EST:     ACCGNCTCGCCGACGTCGACCGCTCCGCCCGCAAGAAGAACAGCCTCAGG                         TTGGATGATTGGGTGCTGTGCCGGATTTACAACAAGAAGGGCGGGCTGGA
genomic: ACCGCCTCGCCGACGTCGACCGCTCCGCCCGCAAGAAGAACAGCCTCAGGgtaagcaaaa ... attggtgcagTTGGATGATTGGGTGCTGTGCCGGATTTACAACAAGAAGGGCGGGCTGGA
EST: gi|58591240|gb|CF989548.1|CF989548
EST:     ACCGCCTCGCCGACGTCGACCGCTCCGCCCGCAAGAAGAACAGCCTCAGG                         TTGGATGATTGGGTGCTGTGCCGGATTTACAACAAGAAGGGCGGGCTGGAG
genomic: ACCGCCTCGCCGACGTCGACCGCTCCGCCCGCAAGAAGAACAGCCTCAGGgtaagcaaaa ... attggtgcagTTGGATGATTGGGTGCTGTGCCGGATTTACAACAAGAAGGGCGGGCTGGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 73 (upstream exon), 74 (downstream exon)
Score: 30

CGCCGGCAAGGCGCCCAAGGGCGAGAAGACCAACTGGATCATGCACGAGTACCGCCTCGCCGACGTCGACCGCTCCGCCCGCAAGAAGAACAGCCTCAGGgtaagcaaaa ... attggtgcagTTGGATGATTGGGTGCTGTGCCGGATTTACAACAAGAAGGGCGGGCTGGAGAAGCCGCCGGCCGCGGCGGTGGCGGCGGCGGGGATGGTGAGCAGCGGCG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGCCGGCAAGGCGCCCAAGGGCGAGAAGACCAACTGGATCATGCACGAGTACCGCCTCGCCGACGTCGACCGCTCCGCCCGCAAGAAGAACAGCCTCAGGgtaagcaaaaaccacacccaagattccatcactaaattcattactaaatctgtgttcatcgtgattattgattaatttagtcacctaattattcgcccaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacaccc