1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CGATGGCTGGAGACGACAGGATGGTAATCGTGGGCTCTGGTGTTTGCACCGGTTGGCGTGATACATTAGAATGGGGAGTCACGAATCTTTCTCTTTCGTGgtgagtttggcaatttgccttctcctcccattcctgaatatgattctcacgaaacatttagattcttcgtgtcgtctctatctgaccttttatgggtaga...
species | Oryza sativa |
transcript | LOC_Os01g65920.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGTTGGCGTGATACATTAGAATGGGGAGTCACGAATCTTTCTCTTTCGTG GTGCCAGGCTCACATGAATGACTTAGTGATGTCACTTGCTCAGAAATTTACEST: gi|29646356|gb|CB651363.1|CB651363
genomic: GGTTGGCGTGATACATTAGAATGGGGAGTCACGAATCTTTCTCTTTCGTGgtgagtttgg ... ttgttttcagGTGCCAGGCTCACATGAATGACTTAGTGATGTCACTTGCTCAGAAATTTAC
EST: GGTTGGCGTGATACATTAGAATGGGGAGTCACGAATCTTTCTCTTTCGTG GTGCCAGGCTCACATGAATGACTTAGTGATGTCACTTGCTCAGAAATTTACEST: gi|12405122|gb|AU166723.1|AU166723
genomic: GGTTGGCGTGATACATTAGAATGGGGAGTCACGAATCTTTCTCTTTCGTGgtgagtttgg ... ttgttttcagGTGCCAGGCTCACATGAATGACTTAGTGATGTCACTTGCTCAGAAATTTAC
EST: GTTGGCGTGATACATTAGAATGGGGAGTCACCGAATCTTTCTCTTTCGTG GTGCCAGGCTCACATGAATGACTTAGTGATGTCACTTGCTCAGAAATTTAC
genomic: GTTGGCGTGATACATTAGAATGGGGAGTCA-CGAATCTTTCTCTTTCGTGgtgagtttgg ... ttgttttcagGTGCCAGGCTCACATGAATGACTTAGTGATGTCACTTGCTCAGAAATTTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGATGGCTGGAGACGACAGGATGGTAATCGTGGGCTCTGGTGTTTGCACCGGTTGGCGTGATACATTAGAATGGGGAGTCACGAATCTTTCTCTTTCGTGgtgagtttggcaatttgccttctcctcccattcctgaatatgattctcacgaaacatttagattcttcgtgtcgtctctatctgaccttttatgggtaga
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