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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGATGGCTGGAGACGACAGGATGGTAATCGTGGGCTCTGGTGTTTGCACCGGTTGGCGTGATACATTAGAATGGGGAGTCACGAATCTTTCTCTTTCGTGgtgagtttggcaatttgccttctcctcccattcctgaatatgattctcacgaaacatttagattcttcgtgtcgtctctatctgaccttttatgggtaga...

Basic information

species Oryza sativa
transcript LOC_Os01g65920.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12405122|gb|AU166723.1|AU166723
EST:     GTTGGCGTGATACATTAGAATGGGGAGTCACCGAATCTTTCTCTTTCGTG                         GTGCCAGGCTCACATGAATGACTTAGTGATGTCACTTGCTCAGAAATTTAC
genomic: GTTGGCGTGATACATTAGAATGGGGAGTCA-CGAATCTTTCTCTTTCGTGgtgagtttgg ... ttgttttcagGTGCCAGGCTCACATGAATGACTTAGTGATGTCACTTGCTCAGAAATTTAC
EST: gi|29643871|gb|CB648878.1|CB648878
EST:     GGTTGGCGTGATACATTAGAATGGGGAGTCACGAATCTTTCTCTTTCGTG                         GTGCCAGGCTCACATGAATGACTTAGTGATGTCACTTGCTCAGAAATTTAC
genomic: GGTTGGCGTGATACATTAGAATGGGGAGTCACGAATCTTTCTCTTTCGTGgtgagtttgg ... ttgttttcagGTGCCAGGCTCACATGAATGACTTAGTGATGTCACTTGCTCAGAAATTTAC