1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGTgtaagtttctgattccttgctgcctagccttatcgtcaatcttatcccaatttgtgaggtcttgtaacgtgtgagcagaggtgggaagaaggaaaaaaaa...
species | Oryza sativa |
transcript | LOC_Os01g65880.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT TGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGGEST: gi|88299494|gb|CI574607.1|CI574607
genomic: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGTgtaagtttct ... cattttacagTGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGG
EST: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT TGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGGEST: gi|117218417|gb|CT858164.1|CT858164
genomic: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGTgtaagtttct ... cattttacagTGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGG
EST: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT TGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGGEST: gi|88571732|gb|CI663105.1|CI663105
genomic: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGTgtaagtttct ... cattttacagTGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGG
EST: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT CGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGGEST: gi|88337815|gb|CI632317.1|CI632317
genomic: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGTgtaagtttct ... cattttacagTGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGG
EST: GCAATGTCATCGCTCTCTTCCTGTTCNTTTCGCCAGT TGTCACCTTCTGGAGGATCATCAAGAAGAGATTAACGGAGGACTTCTCCGGEST: gi|58671599|gb|CK060285.1|CK060285
genomic: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGTgtaagtttct ... cattttacagTGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGG
EST: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT TGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGGEST: gi|88372296|gb|CI619626.1|CI619626
genomic: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGTgtaagtttct ... cattttacagTGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGG
EST: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT TGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGGEST: gi|55827951|gb|AU064019.2|AU064019
genomic: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGTgtaagtttct ... cattttacagTGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGG
EST: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT TGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGGEST: gi|58686371|gb|CK075058.1|CK075058
genomic: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGTgtaagtttct ... cattttacagTGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGG
EST: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT TGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGGEST: gi|88338521|gb|CI645775.1|CI645775
genomic: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGTgtaagtttct ... cattttacagTGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGG
EST: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT TGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGGEST: gi|4715911|gb|AU057027.1|AU057027
genomic: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGTgtaagtttct ... cattttacagTGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGG
EST: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT TGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGGEST: gi|58596407|gb|CK006935.1|CK006935
genomic: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGTgtaagtttct ... cattttacagTGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGG
EST: GCAATGTCATCGCTCTCTTCCGGTTCCTTTCGCCAGT TGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGGEST: gi|88313297|gb|CI594927.1|CI594927
genomic: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGTgtaagtttct ... cattttacagTGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGG
EST: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT TGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGGEST: gi|58663811|gb|CK052497.1|CK052497
genomic: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGTgtaagtttct ... cattttacagTGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGG
EST: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT TGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGGEST: gi|88453324|gb|CI565766.1|CI565766
genomic: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGTgtaagtttct ... cattttacagTGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGG
EST: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT TGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGGEST: gi|88574722|gb|CI666491.1|CI666491
genomic: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGTgtaagtttct ... cattttacagTGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGG
EST: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT TGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGGEST: gi|12622713|gb|AU172926.1|AU172926
genomic: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGTgtaagtttct ... cattttacagTGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGG
EST: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT TGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGGEST: gi|58675409|gb|CK064096.1|CK064096
genomic: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGTgtaagtttct ... cattttacagTGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGG
EST: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT TGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGGEST: gi|58595504|gb|CK006032.1|CK006032
genomic: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGTgtaagtttct ... cattttacagTGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGG
EST: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT TGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGGEST: gi|58666605|gb|CK055291.1|CK055291
genomic: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGTgtaagtttct ... cattttacagTGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGG
EST: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT TGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGGEST: gi|4880424|gb|AU064723.1|AU064723
genomic: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGTgtaagtttct ... cattttacagTGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGG
EST: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT TGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTNCGGEST: gi|58596723|gb|CK007251.1|CK007251
genomic: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGTgtaagtttct ... cattttacagTGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGG
EST: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT TGTCACCTTCTGGAGGATCGTCAAGAAGAGATCAACGGAGGACTTCTCCGGEST: gi|58687982|gb|CK076669.1|CK076669
genomic: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGTgtaagtttct ... cattttacagTGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGG
EST: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT TGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGGEST: gi|8856858|gb|AU094176.1|AU094176
genomic: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGTgtaagtttct ... cattttacagTGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGG
EST: CAATGTCATCGCTTCTCTTCCTGTTCCTTTCGCCAGT TGTCACCTTCTGNAGGATCATCAAGAAGAGATCAACGNAGGACTTCTCCGGEST: gi|4880538|gb|AU064837.1|AU064837
genomic: CAATGTCATCGC-TCTCTTCCTGTTCCTTTCGCCAGTgtaagtttct ... cattttacagTGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGG
EST: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT TGTCACCTTCTGGAGGATCANCAAGAAGAGATCANCGGAGGACTTCTCCGGEST: gi|58598047|gb|CK008575.1|CK008575
genomic: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGTgtaagtttct ... cattttacagTGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGG
EST: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT TGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGGEST: gi|58590655|gb|CF988963.1|CF988963
genomic: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGTgtaagtttct ... cattttacagTGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGG
EST: GCAATGTCATCGGTCTCTTCCTGTTCCTTTCGCCAGT TGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGGEST: gi|88406334|gb|CI596461.1|CI596461
genomic: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGTgtaagtttct ... cattttacagTGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGG
EST: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT TGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGGEST: gi|58669012|gb|CK057698.1|CK057698
genomic: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGTgtaagtttct ... cattttacagTGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGG
EST: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT TGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGGEST: gi|88340153|gb|CI650600.1|CI650600
genomic: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGTgtaagtttct ... cattttacagTGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGG
EST: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT TGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGGEST: gi|25797892|gb|CA753853.1|CA753853
genomic: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGTgtaagtttct ... cattttacagTGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGG
EST: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT TGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGGEST: gi|58601031|gb|CK011559.1|CK011559
genomic: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGTgtaagtttct ... cattttacagTGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGG
EST: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT TGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGGEST: gi|88431567|gb|CI579684.1|CI579684
genomic: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGTgtaagtttct ... cattttacagTGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGG
EST: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT TGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGGEST: gi|88354075|gb|CI636273.1|CI636273
genomic: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGTgtaagtttct ... cattttacagTGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGG
EST: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT TGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGANTTCTCCGGEST: gi|58597601|gb|CK008129.1|CK008129
genomic: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGTgtaagtttct ... cattttacagTGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGG
EST: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT TGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGGEST: gi|58590858|gb|CF989166.1|CF989166
genomic: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGTgtaagtttct ... cattttacagTGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGG
EST: GCAATGTCATCGCTCTCTTCCTGTTGCGTTTCGCCAGT TGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGGEST: gi|88375222|gb|CI680981.1|CI680981
genomic: GCAATGTCATCGCTCTCTTCCTGTT-CCTTTCGCCAGTgtaagtttct ... cattttacagTGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGG
EST: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT TGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGGEST: gi|29684974|gb|CB681249.1|CB681249
genomic: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGTgtaagtttct ... cattttacagTGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGG
EST: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT TGTCACCTTCTGGAGGATCATCAAGAAGAGATCGGCGGAGGACTTCTCCGGEST: gi|29658996|gb|CB655271.1|CB655271
genomic: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGTgtaagtttct ... cattttacagTGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGG
EST: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT TGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGGEST: gi|88577893|gb|CI674506.1|CI674506
genomic: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGTgtaagtttct ... cattttacagTGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGG
EST: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT TGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGGEST: gi|88569829|gb|CI661004.1|CI661004
genomic: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGTgtaagtttct ... cattttacagTGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGG
EST: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT TGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGG
genomic: GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGTgtaagtttct ... cattttacagTGTCACCTTCTGGAGGATCATCAAGAAGAGATCAACGGAGGACTTCTCCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGTgtaagtttctgattccttgctgcctagccttatcgtcaatcttatcccaatttgtgaggtcttgtaacgtgtgagcagaggtgggaagaaggaaaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaggtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa