1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GGCTCGGGGGAAGATTCAGGTGGGCTCGCAGAGAACGAAAGAGAGTCCCCATGGGTTCTTTGGAGACGACGAACACGCGGTACCGGCCGGCCGGAGCAGCgtaagatctccctaccaccacgctgtcccgatctgaagaaaggctccacctttgcgtgcctctcttccactgttcttctctctctctctctctctctctc...
species | Oryza sativa |
transcript | LOC_Os01g65780.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATGGGTTCTTTGGAGACGACGAACACGCGGTACCGGCCGGCCGGAGCAGC GGATGACACAGCTAAGAGAAGGACCCAGAAAAGCAAAAGTTTCAAAGAGGTEST: gi|29630115|gb|CB635124.1|CB635124
genomic: ATGGGTTCTTTGGAGACGACGAACACGCGGTACCGGCCGGCCGGAGCAGCgtaagatctc ... cttctttcagGGATGACACAGCTAAGAGAAGGACCCAGAAAAGCAAAAGTTTCAAAGAGGT
EST: ATGGGTTCTTTGGAGACGACGAACACGCGGTACCGGCCGGCCGGAGCAGC GGATGACACAGCTAAGAGAAGGACCCAGAAAAGCAAAAGTTTCAAAGAGGTEST: gi|33794578|gb|CF323176.1|CF323176
genomic: ATGGGTTCTTTGGAGACGACGAACACGCGGTACCGGCCGGCCGGAGCAGCgtaagatctc ... cttctttcagGGATGACACAGCTAAGAGAAGGACCCAGAAAAGCAAAAGTTTCAAAGAGGT
EST: ATGGGTTCTTTGGAGACGACGAACACGCGGTACCGGCCGGCCGGAGCAGC GGATGACACAGCTAAGAGAAGGACCCAGAAAAGCAAAAGTTTCAAAGAGGTEST: gi|13420432|gb|AU174522.1|AU174522
genomic: ATGGGTTCTTTGGAGACGACGAACACGCGGTACCGGCCGGCCGGAGCAGCgtaagatctc ... cttctttcagGGATGACACAGCTAAGAGAAGGACCCAGAAAAGCAAAAGTTTCAAAGAGGT
EST: CTTTGGAGACGACGAACACGCGGTACCGGCCGGCCGGAGCAGC GGATGACACAGCTAAGAGAAGGACCCAGAAAAGCAAAAGTTTCAAAGAGGT
genomic: CTTTGGAGACGACGAACACGCGGTACCGGCCGGCCGGAGCAGCgtaagatctc ... cttctttcagGGATGACACAGCTAAGAGAAGGACCCAGAAAAGCAAAAGTTTCAAAGAGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCTCGGGGGAAGATTCAGGTGGGCTCGCAGAGAACGAAAGAGAGTCCCCATGGGTTCTTTGGAGACGACGAACACGCGGTACCGGCCGGCCGGAGCAGCgtaagatctccctaccaccacgctgtcccgatctgaagaaaggctccacctttgcgtgcctctcttccactgttcttctctctctctctctctctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctct