1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GGTACCATTTCATCATCGAGAACGACAACAACCAGGTGTGCGGCAAGCGCCACAGCTGCTGCCTCCGCTGCGGGACTCCCACAGTCGCTGGAGAATCAAGgtgggaagaacaagcaccgttagtttcagagaagataaatatagtcaactgtaacaccacgattggtttcgggcggaaggatgataatgtgcctagttta...
species | Oryza sativa |
transcript | LOC_Os01g65600.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CACAGCTGCTGCCTCCGCTGCGGGACTCCCACAGTCGCTGGAGAATCAAG ATGCCTCCTATGCAACTTTGATATGGATGGCGAGGAGCTGGAGGAGTGCGGEST: gi|29623836|gb|CB628847.1|CB628847
genomic: CACAGCTGCTGCCTCCGCTGCGGGACTCCCACAGTCGCTGGAGAATCAAGgtgggaagaa ... tgttttccagATGCCTCCTATGCAACTTTGATATGGATGGCGAGGAGCTGGAGGAGTGCGG
EST: CACAGCTGCTGCCTCCGCTGCGGGACTCCCACAGTCGCTGGAGAATCAAG ATGCCTCCTATGCAACTTTGATATGGATGGCGAGGAGCTGGAGGAGTGCGGEST: gi|29623641|gb|CB628652.1|CB628652
genomic: CACAGCTGCTGCCTCCGCTGCGGGACTCCCACAGTCGCTGGAGAATCAAGgtgggaagaa ... tgttttccagATGCCTCCTATGCAACTTTGATATGGATGGCGAGGAGCTGGAGGAGTGCGG
EST: CACAGCTGCTGCCTCCGCTGCGGGACTCCCACAGTCGCTGGAGAATCAAG ATGCCTCCTATGCAACTTTGATATGGATGGCGAGGAGCTGGAGGAGTGCGGEST: gi|29623559|gb|CB628570.1|CB628570
genomic: CACAGCTGCTGCCTCCGCTGCGGGACTCCCACAGTCGCTGGAGAATCAAGgtgggaagaa ... tgttttccagATGCCTCCTATGCAACTTTGATATGGATGGCGAGGAGCTGGAGGAGTGCGG
EST: CACAGCTGCTGCCTCCGCTGCGGGACTCCCACAGTCGCTGGAGAATCAAG ATGCCTCCTATGCAACTTTGATATGGATGGCGAGGAGCTGGAGGAGTGCGGEST: gi|58674427|gb|CK063113.1|CK063113
genomic: CACAGCTGCTGCCTCCGCTGCGGGACTCCCACAGTCGCTGGAGAATCAAGgtgggaagaa ... tgttttccagATGCCTCCTATGCAACTTTGATATGGATGGCGAGGAGCTGGAGGAGTGCGG
EST: CACAGCTGCTGCCTCCGCTGCGGGACTCCCACAGTCGCTGGAGAATCAAG ATGCCTCCTATGCAACTTTGATATGGATGGCGAGGAGCTGGAGGAGTGCGG
genomic: CACAGCTGCTGCCTCCGCTGCGGGACTCCCACAGTCGCTGGAGAATCAAGgtgggaagaa ... tgttttccagATGCCTCCTATGCAACTTTGATATGGATGGCGAGGAGCTGGAGGAGTGCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTACCATTTCATCATCGAGAACGACAACAACCAGGTGTGCGGCAAGCGCCACAGCTGCTGCCTCCGCTGCGGGACTCCCACAGTCGCTGGAGAATCAAGgtgggaagaacaagcaccgttagtttcagagaagataaatatagtcaactgtaacaccacgattggtttcgggcggaaggatgataatgtgcctagttta
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgggcgg