Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATCTGGCGACGCCTTGGCTCGCCAGCCCACATTTGCAGACACTGTTCCTGGGTATCTCCGGGAGGCCACCTTCGTTCACATACAAAAGgtcagactcgattcacgtgaagctgagttgcattctagacttattgtagattggtgtatttgagtttaatgttttcacatataattcaattcggtaaatt...

Basic information

species Oryza sativa
transcript LOC_Os01g65070.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g65070.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G005444_T01 (Zea mays), 5'ss of exon 2
GTATCTGGCGACGCCTTGGCTCGCCAGCCCACATTTGCAGACACTGTTCCTGGGTATCTCCGGGAGGCCACCTTCGTTCACATACAAAAGgtcagactcgattcacgtgaagctgagttgcattctagacttattgtagattgg-tgtatttgagtttaatgttttcacatataattca-attcggtaaatt
|||||||||||| || ||||| || ||||| |||||||||||| |||||||||| || | ||||| ||| ||||| ||||||||||| |||| | | ||| | | |  ||    ||| | |||| |  | || |     |||   ||||      |  |          | |  ||  | | |  ||   ||
GTATCTGGCGACACCATGGCTGGCGAGCCCGCATTTGCAGACATTGTTCCTGGGCATTTACGGGACGCCGCCTTCATTCACATACAAGAGgttatattcgttacccaggaga--gagatacattgtgcagttttcccttattcactgtagccatttagatgaacaatggacactatcaagagtttgttcttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7332667|gb|AU086013.1|AU086013
EST:     ACACTGTTCCTGGGTATCTCCGGGAGGCCACCTTCGTTCACATACAAAAG                         GTCTGCAGCACTCATGAATGAATAGGCAGCCAGAAACCCCACACCAGTGTG
genomic: ACACTGTTCCTGGGTATCTCCGGGAGGCCACCTTCGTTCACATACAAAAGgtcagactcg ... ttaactgcagGTCTGCAGCACTCATGAATGAATAGGCAGCCAGAAACCCCACACCAGTGTG