1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AGCAGGCGCTCGTCGCGGTGCCGGAGATCACCGTCGAACGGCGGGTCGGTCGTGGCTGGCTCTCGCTAGACGCTGTCGTCACCATCGAGCAGTTTGCCAGgttggtaaaagttatctccgattgcgcttccacggttgattgttcattgtagccacgatgataatagtaatgactagatttgtagaaaaacgagtggacc...
species | Oryza sativa |
transcript | LOC_Os01g64870.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGTGGCTGGCTCTCGCTAGACGCTGTCGTCACCATCGAGCAGTTTGCCAG GTTGAATGGGTTAACGGGGAGGAAGGTGCAGAGGATCTTTGAAGCTCTTGCEST: gi|29644941|gb|CB649948.1|CB649948
genomic: CGTGGCTGGCTCTCGCTAGACGCTGTCGTCACCATCGAGCAGTTTGCCAGgttggtaaaa ... tttttttcagGTTGAATGGGTTAACGGGGAGGAAGGTGCAGAGGATCTTTGAAGCTCTTGC
EST: CGTGGCTGGCTCTCGCTAGACGCTGTCGTCACCATCGAGCAGTTTGCCAG GTTGAATGGGTTAACGGGGAGGAAGGTGCAGAGGATCTTTGAAGCTCTTGCEST: gi|45244988|gb|AB118212.1|AB118212
genomic: CGTGGCTGGCTCTCGCTAGACGCTGTCGTCACCATCGAGCAGTTTGCCAGgttggtaaaa ... tttttttcagGTTGAATGGGTTAACGGGGAGGAAGGTGCAGAGGATCTTTGAAGCTCTTGC
EST: CGTGGCTGGCTCTCGCTAGACGCTGTCGTCACCATCGAGCAGTTTGCCAG GTTGAATGGGTTAACGGGGAGGAAGGTGCAGAGGATCTTTGAAGCTCTTGCEST: gi|29623235|gb|CB628246.1|CB628246
genomic: CGTGGCTGGCTCTCGCTAGACGCTGTCGTCACCATCGAGCAGTTTGCCAGgttggtaaaa ... tttttttcagGTTGAATGGGTTAACGGGGAGGAAGGTGCAGAGGATCTTTGAAGCTCTTGC
EST: CGTGGCTGGCTCTCGCTAGACGCTGTCGTCACCATCGAGCAGTTTGCCAG GTTGAATGGGTTAACGGGGAGGAAGGTGCAGAGGATCTTTGAAGCTCTTGC
genomic: CGTGGCTGGCTCTCGCTAGACGCTGTCGTCACCATCGAGCAGTTTGCCAGgttggtaaaa ... tttttttcagGTTGAATGGGTTAACGGGGAGGAAGGTGCAGAGGATCTTTGAAGCTCTTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCAGGCGCTCGTCGCGGTGCCGGAGATCACCGTCGAACGGCGGGTCGGTCGTGGCTGGCTCTCGCTAGACGCTGTCGTCACCATCGAGCAGTTTGCCAGgttggtaaaagttatctccgattgcgcttccacggttgattgttcattgtagccacgatgataatagtaatgactagatttgtagaaaaacgagtggacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaaaaa