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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGCTGACGCTCCGGCTGTGTTCAACGTTgtaagcgccctcgccacatgccacgccacaagggattcttcccttggatttacactcacttgactaacgatgcgtttcttcttggttttgcgtggatag

Basic information

species Oryza sativa
transcript LOC_Os01g64670.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218483273|gb|FG944903.1|FG944903
EST:     GCGCTGACGCTCCGGCTGTGTTCAACGTT                         GTTGTGGAGATCTCCAAGGGAAGCAAGGTGAAGTACGAGCTCGACAAGAAA
genomic: GCGCTGACGCTCCGGCTGTGTTCAACGTTgtaagcgccc ... gcgtggatagGTTGTGGAGATCTCCAAGGGAAGCAAGGTGAAGTACGAGCTCGACAAGAAA
EST: gi|88414803|gb|CI604161.1|CI604161
EST:     GCGCTGACGCTCCGGCTGTGTTCAACGTT                         GTTGTGGAGATCTCCAAGGGAAGCAAGGTGAAGTACGAGCTCGACAAGAAA
genomic: GCGCTGACGCTCCGGCTGTGTTCAACGTTgtaagcgccc ... gcgtggatagGTTGTGGAGATCTCCAAGGGAAGCAAGGTGAAGTACGAGCTCGACAAGAAA
EST: gi|218485453|gb|FG947366.1|FG947366
EST:     GCGCTGACGCTCCGGCTGTGTTCAACGTT                         GTTGTGGAGATCTCCAAGGGAAGCAAGGTGAAGTACGAGCTCGACAAGAAA
genomic: GCGCTGACGCTCCGGCTGTGTTCAACGTTgtaagcgccc ... gcgtggatagGTTGTGGAGATCTCCAAGGGAAGCAAGGTGAAGTACGAGCTCGACAAGAAA
EST: gi|218503045|gb|FG970333.1|FG970333
EST:     GCGCTGACGCTCCGGCTGTGTTCAACGTT                         GTTGTGGAGATCTCCAAGGGAAGCAAGGTGAAGTACGAGCTCGACAAGAAA
genomic: GCGCTGACGCTCCGGCTGTGTTCAACGTTgtaagcgccc ... gcgtggatagGTTGTGGAGATCTCCAAGGGAAGCAAGGTGAAGTACGAGCTCGACAAGAAA
EST: gi|88395925|gb|CI593127.1|CI593127
EST:     GCGCTGACGCTCCGGCTGTGTTCAACGTT                         GTTGTGGAGATCTCCAAGGGAAGCAAGGTGAAGTACGAGCTCGACAAGAAA
genomic: GCGCTGACGCTCCGGCTGTGTTCAACGTTgtaagcgccc ... gcgtggatagGTTGTGGAGATCTCCAAGGGAAGCAAGGTGAAGTACGAGCTCGACAAGAAA
EST: gi|218499150|gb|FG960130.1|FG960130
EST:     GCGCTGACGCTCCGGCTGTG-TCAACGTT                         GTTGTGGAGATCTCCAAGGGAAGCAAGGTGAAGTACGAGCTCGACAAGAAA
genomic: GCGCTGACGCTCCGGCTGTGTTCAACGTTgtaagcgccc ... gcgtggatagGTTGTGGAGATCTCCAAGGGAAGCAAGGTGAAGTACGAGCTCGACAAGAAA