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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAGGCTCTCGTCAGCAGCGGCCGCACCgtacgaactcactctcttctccccttaaaccatttctttgctcagagtgttctcaatatttatggtttttcactgcgatcgcgtgcag

Basic information

species Oryza sativa
transcript LOC_Os01g64660.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g64660.3 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM5G836250_T02 (Zea mays), 5'ss of exon 2
GGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAGGCTCTCGTCAGCAGCGGCCGCACCgtacgaactcactctcttctcccctta-aaccatt-----tctttgctcagagtgttctcaatatttatggtttttcact-gcgatcgcgtgcag
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||    |   ||| ||| | |   |  |||     | |  | || ||| ||  ||    ||| ||  |   | |  ||    | ||||||
GGAGAGGAGCAGAAGAAGCTGGACGTCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACCgtacgaatatccctccttgtccacctgcgattattgtccgtttgagttccgagagtgttctgc-tttctgactcggcgcccgccgcggtgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58590217|gb|CF988525.1|CF988525
EST:     GGCTCTCGTCAGCAGCGGCCGCACC                         TGCGTTCTTGTCTCCGAGGAGGACGAGGAAGCGACGTTCGTGGACCCTGCG
genomic: GGCTCTCGTCAGCAGCGGCCGCACCgtacgaactc ... tcgcgtgcagTGCGTTCTTGTCTCCGAGGAGGACGAGGAAGCGACGTTCGTGGACCCTGCG
EST: gi|58687204|gb|CK075891.1|CK075891
EST:     TGCTGTCCAACGAGGTGTTCGTCAAGGCTCTCGTCAGCAGCGGCCGCACC                         TGCGTTCTTGTCTCCGAGGAGGACGAGGAAGCGACGTTCGTGGACCCTGCG
genomic: TGCTGTCCAACGAGGTGTTCGTCAAGGCTCTCGTCAGCAGCGGCCGCACCgtacgaactc ... tcgcgtgcagTGCGTTCTTGTCTCCGAGGAGGACGAGGAAGCGACGTTCGTGGACCCTGCG
EST: gi|38481229|gb|CF965318.1|CF965318
EST:     TGCTGTCCAACGAGGTGTTCGTCAAGGCTCTCGTCAGCAGCGGCCGCACC                         TGCGTTCTTGTCTCCGAGGAGGACGAGGAAGCGACGTTCGTG
genomic: TGCTGTCCAACGAGGTGTTCGTCAAGGCTCTCGTCAGCAGCGGCCGCACCgtacgaactc ... tcgcgtgcagTGCGTTCTTGTCTCCGAGGAGGACGAGGAAGCGACGTTCGTG
EST: gi|88370994|gb|CI595106.1|CI595106
EST:     TGCTGTCCAACGAGGTGTTCGTCAAGGCTCTCGTCAGCAGCGGCCGCACC                         TGCGTTCTTGTCTCCGAGGAGGACGAGGAAGCGACGTTCGTGGACCCTGCG
genomic: TGCTGTCCAACGAGGTGTTCGTCAAGGCTCTCGTCAGCAGCGGCCGCACCgtacgaactc ... tcgcgtgcagTGCGTTCTTGTCTCCGAGGAGGACGAGGAAGCGACGTTCGTGGACCCTGCG