Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   		5  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAGgcaagtgtacctggcaataactgtcatctttctcagtttcttgtctctgagattgagatagtgaggactgaggacttgcttggtgtgaccag

Basic information

species Oryza sativa
transcript LOC_Os01g64660.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g64660.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM5G836250_T02 (Zea mays), 5'ss of exon 1
----------------------------------------------------GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAGgcaagtgtacctggcaa-taactgtcatctttctcagtttcttgtctctgagattgagatagtgaggactgaggacttgcttggtgtgaccag
                                                    |||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||  |    |   || ||    | |   ||||     | |    ||||| | ||   ||    | |  | |||| ||| |  |||   
GCTCTCCCACATCGTCCTCGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGGCCGGGCTCGCCCAGCTCATCGGGCTCGCCGGCGAGACCAACGTGCAGgcaagtgcgctgtacggctagctagtttttccttcagagagat-tgatcgagat-gtgacgatg----ccgctgccttggttgct-cgacag-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29682613|gb|CB678888.1|CB678888
EST:     GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAT                         GGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
genomic: GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAGgcaagtgtac ... gtgtgaccagGGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
EST: gi|88346774|gb|CI657325.1|CI657325
EST:     GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG                         GGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
genomic: GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAGgcaagtgtac ... gtgtgaccagGGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
EST: gi|88575674|gb|CI669819.1|CI669819
EST:     GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGNGAGACCAACGTTCAG                         GGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
genomic: GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAGgcaagtgtac ... gtgtgaccagGGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
EST: gi|30227308|gb|CB965200.1|CB965200
EST:     GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG                         GGAGAGGAGCAGAAGAAGCTAGACGTGCTGTCCAACGAGGTGTTCGTCAAG
genomic: GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAGgcaagtgtac ... gtgtgaccagGGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
EST: gi|88448534|gb|CI693922.1|CI693922
EST:     GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG                         GGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
genomic: GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAGgcaagtgtac ... gtgtgaccagGGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
EST: gi|88340388|gb|CI659594.1|CI659594
EST:     GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG                         GGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
genomic: GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAGgcaagtgtac ... gtgtgaccagGGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
EST: gi|88320093|gb|CI639421.1|CI639421
EST:     GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG                         GGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
genomic: GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAGgcaagtgtac ... gtgtgaccagGGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
EST: gi|30227243|gb|CB965135.1|CB965135
EST:     GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG                         GGAGAGGAGCAGAAGAAGCTAGACGTGCTGTCCAACGAGG-GTTCGTCAAG
genomic: GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAGgcaagtgtac ... gtgtgaccagGGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
EST: gi|14980846|gb|BI305524.1|BI305524
EST:     GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG                         GGAGAGGAGCAGAAGAAGCTAGACGTGCTGTCCAACGAGGTGTTCGTCAAG
genomic: GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAGgcaagtgtac ... gtgtgaccagGGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
EST: gi|88321676|gb|CI672817.1|CI672817
EST:     GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG                         GGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
genomic: GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAGgcaagtgtac ... gtgtgaccagGGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
EST: gi|30226581|gb|CB964473.1|CB964473
EST:     GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG                         GGAGAGGAGCAGAAGAAGCTAGACGTGCTGTCCA-CGAGGTGTTCGTCAAG
genomic: GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAGgcaagtgtac ... gtgtgaccagGGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
EST: gi|30228705|gb|CB966595.1|CB966595
EST:     GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG                         GGAGAGGAGCAGAAGAAN-TAGACGTGCTGTCCA-CGAGGTGTTCGTCAAG
genomic: GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAGgcaagtgtac ... gtgtgaccagGGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
EST: gi|218478896|gb|FG959665.1|FG959665
EST:     GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG                         GGAGAGGAGCAGAAGAAGCTAGACGTGCTGTCCAACGAGGTGTTCGTCAAG
genomic: GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAGgcaagtgtac ... gtgtgaccagGGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
EST: gi|30228417|gb|CB966307.1|CB966307
EST:     GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG                         GGAGAGGAGCAGAAGAAGCTAGACGTGCTGTCCA-CGAGGTGTTCGTCAAG
genomic: GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAGgcaagtgtac ... gtgtgaccagGGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
EST: gi|30226528|gb|CB964420.1|CB964420
EST:     GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCA-CGTTCAG                         GGAGAGGAGCAGAAGAAGCTAGACGTGCTGTCCAACGAGGTGTTCGTCA-G
genomic: GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAGgcaagtgtac ... gtgtgaccagGGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
EST: gi|33663175|gb|CF294142.1|CF294142
EST:     GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG                         GGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
genomic: GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAGgcaagtgtac ... gtgtgaccagGGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
EST: gi|88331152|gb|CI639563.1|CI639563
EST:     GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG                         GGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
genomic: GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAGgcaagtgtac ... gtgtgaccagGGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
EST: gi|88338555|gb|CI645809.1|CI645809
EST:     GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG                         GGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
genomic: GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAGgcaagtgtac ... gtgtgaccagGGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
EST: gi|44676478|gb|CR289912.1|CR289912
EST:     GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG                         GGAGAGGAGCAGAAGAAGCTAGACGTGCTGTCCAACGAGGTGTTCGTCAAG
genomic: GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAGgcaagtgtac ... gtgtgaccagGGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
EST: gi|88329187|gb|CI653094.1|CI653094
EST:     GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG                         GGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
genomic: GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAGgcaagtgtac ... gtgtgaccagGGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
EST: gi|88381754|gb|CI682426.1|CI682426
EST:     GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG                         GGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
genomic: GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAGgcaagtgtac ... gtgtgaccagGGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
EST: gi|88370994|gb|CI595106.1|CI595106
EST:     GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG                         GGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
genomic: GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAGgcaagtgtac ... gtgtgaccagGGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
EST: gi|30227645|gb|CB965537.1|CB965537
EST:     GCCGGGCTCGCCAAGCTCATCGGGCTGNC-GGCGAGACCAACGTTCAG                         GGAGAGGAGCAGAAGAAGCTAGACGTGCTGTCCAACG-GGTGTTCGTCAAG
genomic: GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAGgcaagtgtac ... gtgtgaccagGGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
EST: gi|88341640|gb|CI641392.1|CI641392
EST:     GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG                         GGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
genomic: GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAGgcaagtgtac ... gtgtgaccagGGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
EST: gi|88576289|gb|CI670434.1|CI670434
EST:     GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG                         GGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
genomic: GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAGgcaagtgtac ... gtgtgaccagGGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
EST: gi|88408548|gb|CI686045.1|CI686045
EST:     GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG                         GGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
genomic: GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAGgcaagtgtac ... gtgtgaccagGGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
EST: gi|88349794|gb|CI634329.1|CI634329
EST:     GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG                         GGAGAGGAGCANAAGAAGCTGGACGTGCTGTCCAA
genomic: GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAGgcaagtgtac ... gtgtgaccagGGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAA
EST: gi|88571013|gb|CI662386.1|CI662386
EST:     GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG                         GGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
genomic: GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAGgcaagtgtac ... gtgtgaccagGGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
EST: gi|88570906|gb|CI662279.1|CI662279
EST:     GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG                         GGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
genomic: GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAGgcaagtgtac ... gtgtgaccagGGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
EST: gi|88359332|gb|CI679859.1|CI679859
EST:     GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG                         GGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
genomic: GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAGgcaagtgtac ... gtgtgaccagGGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
EST: gi|88326670|gb|CI658392.1|CI658392
EST:     GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG                         GGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
genomic: GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAGgcaagtgtac ... gtgtgaccagGGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
EST: gi|88343123|gb|CI641649.1|CI641649
EST:     GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG                         GGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
genomic: GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAGgcaagtgtac ... gtgtgaccagGGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
EST: gi|88390100|gb|CI590613.1|CI590613
EST:     GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG                         GGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAAGGAGGTGTTCGTCAAG
genomic: GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAGgcaagtgtac ... gtgtgaccagGGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
EST: gi|30228348|gb|CB966239.1|CB966239
EST:     GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG                         GGAGAGGAGCAGAAGAAGCTAGACGTGCTGTCCAACGAG-TGTTCGTCAAG
genomic: GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAGgcaagtgtac ... gtgtgaccagGGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
EST: gi|88336728|gb|CI643903.1|CI643903
EST:     GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG                         GGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
genomic: GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAGgcaagtgtac ... gtgtgaccagGGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
EST: gi|88430397|gb|CI567416.1|CI567416
EST:     GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGAC-AACGTTCAG                         GGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
genomic: GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAGgcaagtgtac ... gtgtgaccagGGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
EST: gi|88388836|gb|CI592724.1|CI592724
EST:     GCCGGGCTCGCCAAGCTCATCGGGCTGGACGGCGAGACCAACGTTCAG                         GGAGAGGAGCAGAAGAAGCTGGACGTGCTGTC-AACGAGGTGTTCGTCAAG
genomic: GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAGgcaagtgtac ... gtgtgaccagGGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
EST: gi|30228486|gb|CB966376.1|CB966376
EST:     GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGT-CAG                         GGAGAGGAGCAGAAGAAGCTAGACGTGCTGTCCAACGAGGTGTTCGTCA-G
genomic: GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAGgcaagtgtac ... gtgtgaccagGGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
EST: gi|88588511|gb|CI706332.1|CI706332
EST:     GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG                         GGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
genomic: GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAGgcaagtgtac ... gtgtgaccagGGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
EST: gi|88347733|gb|CI655086.1|CI655086
EST:     GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG                         GGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
genomic: GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAGgcaagtgtac ... gtgtgaccagGGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
EST: gi|86848574|gb|CI293902.1|CI293902
EST:     GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG                         GGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
genomic: GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAGgcaagtgtac ... gtgtgaccagGGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
EST: gi|86829513|gb|CI286720.1|CI286720
EST:     GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG                         GGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
genomic: GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAGgcaagtgtac ... gtgtgaccagGGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 70 (upstream exon), 70 (downstream exon)
Score: 21

GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAGgcaagtgtac ... gtgtgaccagGGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAGGCTCTCGTCAGCAGCGGCCGCACC




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAGgcaagtgtacctggcaataactgtcatctttctcagtttcttgtctctgagattgagatagtgaggactgaggacttgcttggtgtgaccag

- - - - -  CAAGCT
- - - - - -  AGCTCA