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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGCAGCTGCTCGCTCTCTCTGGTTGTTCCTCTCAACTAGAGTTCTGCTGGGTATGGCAGAAGGGGTGGCACTCCCAAGTATGAACAACATGGTGTTGAGgtatttcttttgatcatttatcaatcttcacgttttcgccacaacctaatattatgtgtttgcattgctgccctgtttaggaaactaattggttcaagtcttttcttatag

Basic information

species Oryza sativa
transcript LOC_Os01g63290.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g63290.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM5G856598_T02 (Zea mays), 5'ss of exon 2
GGGCAGCTGCTCGCTCTCTCTGGTTGTTCCTCTCAACTAGAGTTCTGCTGGGTATGGCAGAAGGGGTGGCACTCCCAAGTATGAACAACATGGTGTTGAGgtattt-cttttg----atcatttat----------caatcttca-cgttttcgccacaa---cctaatattatgtgtttgc----attgctgccctg-tttaggaaactaattggttcaagtcttttcttatag
||||||||| ||| ||| |||||||||| ||||  || ||||| ||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||| | | ||||    ||||||  |          | |||| || | ||||| ||||||   | || | || | ||  ||     ||| ||||   | |||| | || |  |||  |     | ||| ||| ||
GGGCAGCTGGTCGATCTATCTGGTTGTTTCTCTTTACCAGAGTCCTGCTGGGTATTGCAGAAGGAGTGGCACTCCCAAGCATGAACAACATGGTGTTGAGgtatctacctttgtaacatcattccttttgactactccatctccaactttttccccacaaaaacatattgttgtttggctgtgggaatttctgctaagatttatgtaagtgtttgcattggcccctttattacag