Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCGGCACCGCTGTTGTGACTGGGCCGAATGGCCGGTTGGCTATGGGCAGGCTCGGTGCTCTGTGTGAACAGgtaaactttccccccaaatttttttaccagaggttaatgctctgaccaaccgagcttgtgctaatcagtgtcagttaaccggtgtgataaatttcccag

Basic information

species Oryza sativa
transcript LOC_Os01g62900.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g62900.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G028535_T02 (Zea mays), 5'ss of exon 2
GTCGGCACCGCTGTTGTGACTGGGCCGAATGGCCGGTTGGCTATGGGCAGGCTCGGTGCTCTGTGTGAACAGgta-aactttccccccaaatttttttaccagaggttaatgctctgaccaaccgagcttgtgctaatcagtgtcagttaaccggtgtgataaatttcccag---
|| ||||| |||||||| |||||   ||||||||| ||||| ||||| ||||||||| |||| |||||||||||| ||          | |     || | | ||   ||||     |  |||     |||||  || ||     |  |  ||    || | |   ||  ||   
GTGGGCACGGCTGTTGTCACTGGCATGAATGGCCGATTGGCCATGGGGAGGCTCGGTTCTCTCTGTGAACAGgtacaatacgtataatagaggaaatttcaaaagaaaaatgtaaacagaaac-atctttgtgacaa-cataaaaatgtggcccacatg-tcaggctcatagcgt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88391203|gb|CI595457.1|CI595457
EST:     GGCCGAATGGCCGGTTGGCTATGGGCAGGCTCGGTGCTCTGTGTGAACAG                         GTGAAGCAGCTAAATTTTGAGGGGTACGAGGTGATTCTGGTCACCTCTGGT
genomic: GGCCGAATGGCCGGTTGGCTATGGGCAGGCTCGGTGCTCTGTGTGAACAGgtaaactttc ... aatttcccagGTGAAGCAGCTAAATTTTGAGGGGTACGAGGTGATTCTGGTCACCTCTGGT
EST: gi|117246434|gb|CT843273.1|CT843273
EST:     GGCCGAATGGCCGGTTGGCTATGGGCAGGCTCGGTGCTCTGTGTGAACAG                         GTGAAGCAGCTAAATTTTGAGGGGTACGAGGTGATTCTGGTCACCTCTGGT
genomic: GGCCGAATGGCCGGTTGGCTATGGGCAGGCTCGGTGCTCTGTGTGAACAGgtaaactttc ... aatttcccagGTGAAGCAGCTAAATTTTGAGGGGTACGAGGTGATTCTGGTCACCTCTGGT