1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGTTCCTGCCGCAGGTGAAGGGTTTGCTCCGGCCGGACTTCTCCGTCGCCGCGCAGAATTGCTGGGTGCGCAAGGGCGGCGCCTTCACTGGCGAGATCAGgtgagcgtcctcccccactcccctgctctgtttcccttccccttttgttttgagagagatgattagtgatttatttggcattgggtgaacaactcggcct...
species | Oryza sativa |
transcript | LOC_Os01g62420.4 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCGCAGAATTGCTGGGTGCGCAAGGGCGGCGCCTTCACTGGCGAGATCAG TGCCGAGATGTTGGTGAACCTGCAGGTGCCTTGGGTGATTCTGGGACACTCEST: gi|33689962|gb|CF318201.1|CF318201
genomic: GCGCAGAATTGCTGGGTGCGCAAGGGCGGCGCCTTCACTGGCGAGATCAGgtgagcgtcc ... atatttgcagTGCCGAGATGTTGGTGAACCTGCAGGTGCCTTGGGTGATTCTGGGACACTC
EST: GCGCAGAATTGCTGGGTGCGCAAGGGCGGCGCCTTCACTGGCGAGATCAG TGCCGAGATGTTGGTGAACCTGCAGGTGCCTTGGGGTGAT-CTGGGACACTEST: gi|33688031|gb|CF316270.1|CF316270
genomic: GCGCAGAATTGCTGGGTGCGCAAGGGCGGCGCCTTCACTGGCGAGATCAGgtgagcgtcc ... atatttgcagTGCCGAGATGTTGGTGAACCTGCAGGTGCCTTGGG-TGATTCTGGGACACT
EST: GCGCAGAATTGCTGGGTGCGCAAGGGCGGCGCCTTCACTGGCGAGATCAG TGCCGAGATGTTGGTGAACCTGCAGGTGCCTTGGGTGATTCTGGGACACTCEST: gi|33688122|gb|CF316361.1|CF316361
genomic: GCGCAGAATTGCTGGGTGCGCAAGGGCGGCGCCTTCACTGGCGAGATCAGgtgagcgtcc ... atatttgcagTGCCGAGATGTTGGTGAACCTGCAGGTGCCTTGGGTGATTCTGGGACACTC
EST: GCGCAGAATTGCTGGGTGCGCAAGGGCGGCGCCTTCACTGGCGAGATCAG TGCCGAGATGTTGGTGAACCTGCAGGTGCCTTGGGTGATTCTGGGACACTCEST: gi|58597190|gb|CK007718.1|CK007718
genomic: GCGCAGAATTGCTGGGTGCGCAAGGGCGGCGCCTTCACTGGCGAGATCAGgtgagcgtcc ... atatttgcagTGCCGAGATGTTGGTGAACCTGCAGGTGCCTTGGGTGATTCTGGGACACTC
EST: GCGCAGAATTGCTGGGTGCGCAAGGGCGGCGCCTTCACTGGCGAGATCAG TGCCGAGATGTTGGTGAACCTGCAGGTGCCTTGGGTGATACTGGGACACTCEST: gi|33809786|gb|CF330782.1|CF330782
genomic: GCGCAGAATTGCTGGGTGCGCAAGGGCGGCGCCTTCACTGGCGAGATCAGgtgagcgtcc ... atatttgcagTGCCGAGATGTTGGTGAACCTGCAGGTGCCTTGGGTGATTCTGGGACACTC
EST: GCGCAGAATTGCTGGGTGCGCAAGGGCGGCGCCTTCACTGGCGAGATCAG TGCCGAGATGTTGGTGAACCTGCAGGTGCCTTGGGCGATTCTGGGACACTCEST: gi|33689921|gb|CF318160.1|CF318160
genomic: GCGCAGAATTGCTGGGTGCGCAAGGGCGGCGCCTTCACTGGCGAGATCAGgtgagcgtcc ... atatttgcagTGCCGAGATGTTGGTGAACCTGCAGGTGCCTTGGGTGATTCTGGGACACTC
EST: GCGCAGAATTGCTGGGTGCGCAAGGGCGGCGCCTTCACTGGCGAGATCAG TGCCGAGATGTTGGTGAACCTGCAGGTGCCTTGGGTGATTCTGGGACACTCEST: gi|33693382|gb|CF321621.1|CF321621
genomic: GCGCAGAATTGCTGGGTGCGCAAGGGCGGCGCCTTCACTGGCGAGATCAGgtgagcgtcc ... atatttgcagTGCCGAGATGTTGGTGAACCTGCAGGTGCCTTGGGTGATTCTGGGACACTC
EST: GCGCAGAATTGCTGGGTGCGCAAGGGCGGCGCCTTCACTGGCGAGATCAG TGCCGAGATGTTGGTGAACCTGCAGGTGCCTTGGGTGATTCTGGGACACTCEST: gi|58682138|gb|CK070825.1|CK070825
genomic: GCGCAGAATTGCTGGGTGCGCAAGGGCGGCGCCTTCACTGGCGAGATCAGgtgagcgtcc ... atatttgcagTGCCGAGATGTTGGTGAACCTGCAGGTGCCTTGGGTGATTCTGGGACACTC
EST: GCGCAGAATTGCTGGGTGCGCAAGGGCGGCGCCTTCACTGGCGAGATCAG TGCCGAGATGTNGGTGAACCTGCAGGTGCCTTGGGTGATTCTGGGACACTC
genomic: GCGCAGAATTGCTGGGTGCGCAAGGGCGGCGCCTTCACTGGCGAGATCAGgtgagcgtcc ... atatttgcagTGCCGAGATGTTGGTGAACCTGCAGGTGCCTTGGGTGATTCTGGGACACTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTCCTGCCGCAGGTGAAGGGTTTGCTCCGGCCGGACTTCTCCGTCGCCGCGCAGAATTGCTGGGTGCGCAAGGGCGGCGCCTTCACTGGCGAGATCAGgtgagcgtcctcccccactcccctgctctgtttcccttccccttttgttttgagagagatgattagtgatttatttggcattgggtgaacaactcggcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttcccc