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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATGATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACGgtacgaattatggtgtctatgatgcaagcaatttcttcccttttcattctgttctgcactagttccattttgttgacaacttgacatatattctgcgtgg...

Basic information

species Oryza sativa
transcript LOC_Os01g62244.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g62244.3 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G085600_T03 (Zea mays), 5'ss of exon 4
TTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATGATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACGgtacgaattatggtgtctatgat-gcaagcaatttcttcccttttcat--tctgttctgcactagttccattttgttgacaacttgacatatattctgcgtgg-
 ||||| ||||| || || || || |||||||||||||| |||||||| ||||| || ||||||||||| || |||||||| |||||||| ||||| || ||| |  ||    |  ||||| |  ||  |  |||   || |||| ||  |||||||| ||||      |     ||   |  ||  || || | ||| |    
CTATCCTGATGGGCGGGTTTGTATCTCTATTCTTCATCCACCTGGTGAAGATCCAAACGGTTATGAGCTCGCAAGTGAGCGATGGACACCTGTGCACACAgtatggcttcgtata-ctatgtttacatacctttttccccatttttatcttctgttctccactg---tgaagccattattatattaccaaatttactgggatac

upper sequence: LOC_Os01g62244.3 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G007300_T02 (Zea mays), 5'ss of exon 4
TTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATGATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACGgtacgaattatggtgtctatgat-gcaagcaatttcttcccttttcattctgttctgcactagttccattttgttgacaacttgacatatattctgcgtgg
|||| | ||||| |  || || || |||||||||||||| |||||||| ||||| | |||||||||||| || ||||||||||||||||| |||||||| ||| |  ||     | ||||  |   |  |  ||  || || ||    |||  | | | ||| |   |   |  ||     ||  || | |||    | | 
TTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAGATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACAgtatggctttgatagactatatttatatacctttcttttccattattatcttatgttctctactgtgaagctcctgttgtattacca-aaatttactggga

upper sequence: LOC_Os01g62244.3 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA12G06960.1 (Glycine max), 5'ss of exon 4
TTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATGATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACGgtacg-aattatggtgtctatgatgcaagcaatttcttcccttttcattctgttctgcactagt--tccattttgt--tgacaacttgacat-atattctgcgtgg
 ||||| ||||| || || ||||| || ||||||||||| |||||||| ||||| |||||||| ||||||||||||||||| |||||||| || ||||||||| |  |  ||      ||   | ||    ||| |  |  |       || ||    ||||    || | || ||  ||  || |||| || | ||| |      
ATATCCCGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGGATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACGgtatgtgaacatataaattactcttca--ttattacacctatggcttggctattggtgactaagaatcaacttagtggtggaaatttgagatgagattatct----

upper sequence: LOC_Os01g62244.3 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA13G40990.1 (Glycine max), 5'ss of exon 4
TTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATGATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACGgtacgaattatggtgtctatgatgcaagcaatttcttcccttttcattctgttctgcacta-gttccattttgttgacaacttgacatatattctgcgtgg
 ||||| ||||| || || ||||| || ||||||||||| |||||||| || || ||||||||||||||||| |||||||| ||||| || || ||||| ||| |  |||     |  |  ||  |   ||||| ||   || |  ||    |  |  ||  |     ||||   | |   |||    |  || | | |  
GTATCCTGATGGGCGAGTTTGCATATCAATTCTTCATCCTCCTGGTGACGACCCAAATGGTTATGAGCTTGCAAGTGAGCGCTGGACGCCTGTTCATACAgtatgt-ttaaacattacaccataaatttaatttatttatttatttttacaatgagacctctgcctttttttagggtctgtttggataaacttttccataa

upper sequence: LOC_Os01g62244.3 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA11G14980.1 (Glycine max), 5'ss of exon 4
TTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATGATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACGgtacg-aattatggtgtctatgatgcaagcaatttcttcccttttcatt--ctgttctgcactagt--tccattttgt--tgacaacttgacatatattctgcgtgg
 ||||| ||||| || || ||||| || ||||||||||| |||||||| ||||| ||||||||||||||||| |||||||| |||||||| || |||||||||||  |  ||      |   |    |    || ||    |||   ||  |||||    ||||    || | || ||  ||  || |||| ||   ||        
ATATCCTGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGGATCCAAATGGTTATGAGCTTGCAAGTGAGCGCTGGACACCTGTTCATACGgtacgtgaacatataaaattataaattactctttactatggtttggcttggctgttggtgactaagaatcaacttagtggtggaaatttgagatgagttt-------

upper sequence: LOC_Os01g62244.3 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA15G04470.1 (Glycine max), 5'ss of exon 4
TTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATGATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACGgtacgaat---tatggtgtctatgatgcaagcaatttcttccctttt-cattctgttctgcactagttccattttgttgacaacttgacatatattctgcgtgg
 || || ||||| || || ||||| || ||||||||||| || |||||||| || ||||||||||||||||| |||||||| ||||| || || ||||| ||| | ||    ||     |    ||  ||  ||||| ||   |||  || |  |  ||   |   ||   ||  | ||     |||    |  || | | |  
GTACCCCGATGGGCGAGTTTGCATATCAATTCTTCATCCACCCGGTGATGACCCAAATGGTTATGAGCTTGCAAGTGAGCGCTGGACGCCTGTTCATACAgtatgtataaacataaaaccataaatttaattaatttatttattttaacaatgagagctctgcc--ttttgttagggtgtgtgtttggataaacttttccat--

upper sequence: LOC_Os01g62244.3 (Oryza sativa), 5'ss of exon 2
lower sequence: AT3G55380.2 (Arabidopsis thaliana), 5'ss of exon 4
TTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATGATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACGgtacgaattatggtgtc---tatgatgcaagcaatttcttcccttttc------attctgttctgcactagttc---cattttgttgacaacttgacat----atattctgcgtgg---------------------------
|||| | ||||||   || |||||||||||||||||||| ||||||||||||||  |||| || ||||||||   ||| |||||||| || || ||||||||| |  || |  | |    | |      || | | |  |   || |        ||  ||| |  |    |||    || |||  | |  ||| | |     | ||||| ||                              
TTATTCTGATGGAAAAGTTTGCATTTCTATTCTTCATCCTCCTGGTGATGATCCTCATGGATACGAGCTTGCCTCTGAACGTTGGACCCCTGTCCATACGgtatgttttttcttttaccgtttagcttcagtactctggtaatttgtttgcagggttgagttatctatggcttcgaatatcttggggtctgctttatagcctaacattcttcgaatacagctagctttctcttgtgtagatag

upper sequence: LOC_Os01g62244.3 (Oryza sativa), 5'ss of exon 2
lower sequence: AT3G46460.1 (Arabidopsis thaliana), 5'ss of exon 4
TTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATGATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACGgtacgaattatggtg-tctatgatgc-----aagcaatttcttcc---cttttcattctgttctgcactagttccattttg--ttgacaacttgacatatattctgcgtgg------
|||||| ||||| || || || || |||||||| ||||| |||||||||||||| | ||| ||||||||||| |||||||||||||| || || || || |||||  |||   || || |  || |          || |||      ||| |  || |   |   | |  |  || || |  ||||  | | || ||| |   ||| ||       
TTATCCCGATGGCCGCGTTTGTATATCTATTCTACATCCTCCTGGTGATGATCCAAGTGGATATGAGCTTGCAAGTGAGCGTTGGACGCCTGTTCACACAgtacgttttacaatgatccaacattctccttgtatgatatctgagaagcttcttcttataaccaagaatgatgtcaattagatttgatgagtggaaata-acattgc-tgatttcag

upper sequence: LOC_Os01g62244.3 (Oryza sativa), 5'ss of exon 2
lower sequence: AT3G55380.1 (Arabidopsis thaliana), 5'ss of exon 4
TTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATGATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACGgtacgaattatggtgtc---tatgatgcaagcaatttcttcccttttcattctgttctgcactagttccattttgttgacaacttgacatatattctgcgtgg
|||| | ||||||   || |||||||||||||||||||| ||||||||||||||  |||| || ||||||||   ||| |||||||| || || ||||||||| |  || |  | |    | |      || | | |  |   || |  | | |   ||   ||  |     ||    | | ||||   | |  | |      
TTATTCTGATGGAAAAGTTTGCATTTCTATTCTTCATCCTCCTGGTGATGATCCTCATGGATACGAGCTTGCCTCTGAACGTTGGACCCCTGTCCATACGgtatgttttttcttttaccgtttagcttcagtactctggtaatttgtt-tgcagggttgagttatctatggctt-cgaatatcttggggtctgctttatagc-

upper sequence: LOC_Os01g62244.3 (Oryza sativa), 5'ss of exon 2
lower sequence: AT5G59300.1 (Arabidopsis thaliana), 5'ss of exon 4
TTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATGATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACGgtacgaattatggtgtctatgatgcaagcaatttcttccctttt----cattctgttctgc-actagttccattttgtt---gacaacttgacatatattctgcgtgg--------------------------------------------------------
|||| | ||||| ||||| ||||| |||||||||||||| || ||||||||||| |  |||||||||||||| || ||||||||||| || || ||||| ||| |  | |   ||  |    |     || |||  | |  ||      | |   ||||   | |||    | | |  |   ||||   | |       |||  |||                                                         
TTATTCTGATGGTCGTGTTTGCATATCTATTCTTCATCCTCCCGGTGATGATCCTAGCGGTTATGAGCTTGCAAGCGAGCGTTGGACTCCTGTTCATACAgtatgt-tcaaattgatttgagtttgttcatttttgttcgcttcatagtagtagattctatgattagagttactatagttcagacactataaagggatctctaggtgatttatttcatgtctcagatgttcatgccgtagtgaaacaaattatggtgctttcag

upper sequence: LOC_Os01g62244.3 (Oryza sativa), 5'ss of exon 2
lower sequence: Vv06s0004g04430.t01 (Vitis vinifera), 5'ss of exon 4
TTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATGATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACGgtacgaattatggtgtctatgatgcaagcaatttcttcccttt-----tcattctgttctgcactagttccattttgttgacaacttgacatat-attctgcgtgg
|||||| |||||||| |||||||| || ||||| ||||| |||||||| || || ||||| ||||||||||| |||||||| ||||  ||| | |||||||||     ||| |  | |   || ||    | |||||  ||||     |      |||   || || |   |||   |  | |  | ||  |   |  ||      
TTATCCAGATGGACGAGTATGCATATCAATTCTCCATCCTCCTGGTGAGGACCCAAATGGATATGAGCTTGCAAGTGAGCGCTGGATGCCAATCCATACGgtaattcatatagcatatcaaattcacttcacttctttgctttcatgatagagacgttgcccattaatgtaattgaatgcaaacatggaagtgccacact------

upper sequence: LOC_Os01g62244.3 (Oryza sativa), 5'ss of exon 2
lower sequence: Vv08s0007g00120.t01 (Vitis vinifera), 5'ss of exon 4
TTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATGATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACGgtacgaattatggtgtctatgatgcaag-caatttcttcccttttcattctgttctgcactagttccattttg-ttga-caacttgacatatattctgcgtgg
|||||| |||||||| || ||||| || ||| | ||||| |||||||| || || ||||| ||||||||||| ||||||||||||||||| || || |||||||  |  ||     ||    |  | | | ||||||| |   |   |     | |  | |   | | ||  | | || |||  ||   || || || |    
TTATCCTGATGGACGAGTTTGCATATCAATTTTACATCCTCCTGGTGAGGACCCAAATGGCTATGAGCTTGCAAGTGAGCGTTGGACACCTGTCCACACGgtacatacaatctgaacttccttcaatgactatttcttgctcctctgtgagcatttatattcactgccttggggtcgatcaatctgttgtacatgcttct---

upper sequence: LOC_Os01g62244.3 (Oryza sativa), 5'ss of exon 2
lower sequence: PP1S75_236V6.1 (Physcomitrella patens), 5'ss of exon 6
TTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATGATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACGgtacga-attatggtgtct-atgatgcaagcaatttcttcccttttcattctgt-tctgcactagttccatttt-gttgacaacttgacatata-ttctgcgtgg-----------------------------------
|||||| |||||||| || |||||||| ||||| ||| | |||||||||||||| |||||||||||  | ||||||||||||||| | || |||||||| ||  |  || |  |||| | ||    | || ||     |  || | || |   | | ||    |   ||| | | | ||  ||||||  || || ||||   ||                                    
TTATCCTGATGGACGGGTTTGCATTTCAATTCTACATGCTCCTGGTGATGATCCAAATGGTTATGAATTGGCGAGTGAGCGTTGGTCTCCCGTGCATACTgtgagttatcaaagtgttttatttatcgagtaaaggtgttgctatgcaattcatgtgtgtttcatgcccactgtagatgcaaacttggtatctaattctaattgttagtgtccgactgatagttgtttgtgaaagtgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33656879|gb|CF279493.1|CF279493
EST:     ATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACG                         GTTGAGAGCATAGTTCTGAGCATCATTTCGATGCTTTTTGGTCCAAATGAT
genomic: ATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACGgtacgaatta ... ccatttacagGTTGAGAGCATAGTTCTGAGCATCATTTCGATGCTTTCTGGTCCAAATGAT
EST: gi|33682529|gb|CF310768.1|CF310768
EST:     ATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACG                         GTTGAGAGCATAGTTCTGAGCATCATTTCGATGCTTTCTGGTCCAAATGAT
genomic: ATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACGgtacgaatta ... ccatttacagGTTGAGAGCATAGTTCTGAGCATCATTTCGATGCTTTCTGGTCCAAATGAT
EST: gi|33693886|gb|CF322125.1|CF322125
EST:     ATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACG                         GTTGAGAGCATAGTTCTGAGCATCATTTCGATGCTTTCTGGTCCAAATGAT
genomic: ATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACGgtacgaatta ... ccatttacagGTTGAGAGCATAGTTCTGAGCATCATTTCGATGCTTTCTGGTCCAAATGAT
EST: gi|9866226|gb|AU101976.1|AU101976
EST:     CCCCAATGGTTNTGAGCTTGCGAGTGAGCNTTGGACACCCAGTGCATACG                         GTTGAGAGCATAGTTCTGAGCATCATTTCGATGCTTTCTGGTCCAAATGAT
genomic: -CCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACA-CCAGTGCATACGgtacgaatta ... ccatttacagGTTGAGAGCATAGTTCTGAGCATCATTTCGATGCTTTCTGGTCCAAATGAT
EST: gi|86421652|gb|CI057641.1|CI057641
EST:     ATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACG                         GTTGAGAGCATAGTTCTGAGCATCATTTCGATGCTTTCTGGTCCAAATGAT
genomic: ATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACGgtacgaatta ... ccatttacagGTTGAGAGCATAGTTCTGAGCATCATTTCGATGCTTTCTGGTCCAAATGAT
EST: gi|218503159|gb|FG952517.1|FG952517
EST:     ATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACG                         GTTGAGAGCATAGTTCTGAGCATCATTTCGATGCTTTCTGGTCCAAATGAT
genomic: ATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACGgtacgaatta ... ccatttacagGTTGAGAGCATAGTTCTGAGCATCATTTCGATGCTTTCTGGTCCAAATGAT
EST: gi|88994676|gb|CI036257.1|CI036257
EST:     GTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACG                         GTTGAGAGCATAGTTCTGAGCATCATTTCGATGCTTTCTGGTCCCAATGAT
genomic: GTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACGgtacgaatta ... ccatttacagGTTGAGAGCATAGTTCTGAGCATCATTTCGATGCTTTCTGGTCCAAATGAT
EST: gi|218489286|gb|FG970461.1|FG970461
EST:     ATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACG                         GTTGAGAGCATAGTTCTGAGCATCATTTCGATGCTTTCTGGTCCAAATGAT
genomic: ATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACGgtacgaatta ... ccatttacagGTTGAGAGCATAGTTCTGAGCATCATTTCGATGCTTTCTGGTCCAAATGAT
EST: gi|88985016|gb|CI011872.1|CI011872
EST:     TTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACG                         GTTGAGAGCATAGTTCTGAGCATCATTTCGATGCTTTCTGGTCCAAATGAT
genomic: TTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACGgtacgaatta ... ccatttacagGTTGAGAGCATAGTTCTGAGCATCATTTCGATGCTTTCTGGTCCAAATGAT
EST: gi|15846873|gb|BI795149.1|BI795149
EST:     ATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACG                         GTTGAGAGCATAGTTCTGAGCATCATTTCGATGCTTTCTGGTCCAAATGAT
genomic: ATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACGgtacgaatta ... ccatttacagGTTGAGAGCATAGTTCTGAGCATCATTTCGATGCTTTCTGGTCCAAATGAT
EST: gi|8860110|gb|AU097428.1|AU097428
EST:     TCCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACG                         GTTGAGAGCATAGTTCTGAGCATCATTTCGATGCTTTCTGGTCCAAATGAT
genomic: T-CCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACGgtacgaatta ... ccatttacagGTTGAGAGCATAGTTCTGAGCATCATTTCGATGCTTTCTGGTCCAAATGAT
EST: gi|2800997|gb|AA754291.1|AA754291
EST:     ATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGMCAC-AGTGCATACG                         GTTGAGAGCATAGTTCTGAGCATCATTTCGATGCTTTCTGGCCCAAATKAT
genomic: ATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACGgtacgaatta ... ccatttacagGTTGAGAGCATAGTTCTGAGCATCATTTCGATGCTTTCTGGTCCAAATGAT
EST: gi|58589723|gb|CF988031.1|CF988031
EST:     ATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACG                         GTTGAGAGCATAGTTCTGAGCATCATTTCGATGCTTTCTGGTCCAAATGAT
genomic: ATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACGgtacgaatta ... ccatttacagGTTGAGAGCATAGTTCTGAGCATCATTTCGATGCTTTCTGGTCCAAATGAT
EST: gi|86870070|gb|CI317991.1|CI317991
EST:     ATCCCAATGGTTATTAGC-TGCGAGTGAGCGTTGGACACCAGTGCATACG                         GTTTAGAGCATAGTTCTGAGCATCATTTCGATGCTTTCTGGTCCAAATGAT
genomic: ATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACGgtacgaatta ... ccatttacagGTTGAGAGCATAGTTCTGAGCATCATTTCGATGCTTTCTGGTCCAAATGAT
EST: gi|33655964|gb|CF278578.1|CF278578
EST:     GTTATGAGCTTGCGAGTGAGCGTTGGACACCCAGTGCATACG                         GTTGAGAGCATAGTTCTGAGCATCATTTCGATGCTTTCTGGTCCAAATGAT
genomic: GTTATGAGCTTGCGAGTGAGCGTTGGACA-CCAGTGCATACGgtacgaatta ... ccatttacagGTTGAGAGCATAGTTCTGAGCATCATTTCGATGCTTTCTGGTCCAAATGAT
EST: gi|33811991|gb|CF331885.1|CF331885
EST:     ATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACG                         GTTGAGAGCATAGTTCTGAGCATCATTTCGATGCTTTTTGGTCCAAATGAT
genomic: ATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACGgtacgaatta ... ccatttacagGTTGAGAGCATAGTTCTGAGCATCATTTCGATGCTTTCTGGTCCAAATGAT
EST: gi|33803962|gb|CF327857.1|CF327857
EST:     ATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACG                         GTTGAGAGCATAGTTCTGAGCATCATTTCGATGCTTTCTGGTCCAAATGAT
genomic: ATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACGgtacgaatta ... ccatttacagGTTGAGAGCATAGTTCTGAGCATCATTTCGATGCTTTCTGGTCCAAATGAT
EST: gi|33687165|gb|CF315404.1|CF315404
EST:     ATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACG                         GTTGAGAGCATAGTTCTGAGCATCATTTCGATGCTTTCTGGTCCAAATGAT
genomic: ATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACGgtacgaatta ... ccatttacagGTTGAGAGCATAGTTCTGAGCATCATTTCGATGCTTTCTGGTCCAAATGAT
EST: gi|88979399|gb|CI025901.1|CI025901
EST:     ATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACG                         GTTGAGAGCATAGTTCTGAGCATCATTTCGATGCTTTCTGGTCCAAATGAT
genomic: ATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACGgtacgaatta ... ccatttacagGTTGAGAGCATAGTTCTGAGCATCATTTCGATGCTTTCTGGTCCAAATGAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 70 (upstream exon), 74 (downstream exon)
Score: 39

TTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATGATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACGgtacgaatta ... ccatttacagGTTGAGAGCATAGTTCTGAGCATCATTTCGATGCTTTCTGGTCCAAATGATGAATCACCAGCAAATATTGAAGCAGCT




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATGATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATACGgtacgaattatggtgtctatgatgcaagcaatttcttcccttttcattctgttctgcactagttccattttgttgacaacttgacatatattctgcgtgg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT