Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGCGAAGCACCCCGTGGATGGGTTCTCGGCTGGGTTAGTCGACGACAGCAACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATAgtgagttggattctctctccaattcgatgcatgcttccatgaatcatctgcctcatccgtgttcatgccatgcgagtggagttttttcgtgtatacccgc...

Basic information

species Oryza sativa
transcript LOC_Os01g62244.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g62244.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G007300_T02 (Zea mays), 5'ss of exon 2
TCGCGAAGCACCCCGTGGATGGGTTCTCGGCTGGGTTAGTCGACGACAGCAACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATAgtgagttggattctctctccaattcgatgcatgcttccatgaatcatctgcctcatccgtgttcatgccatgcgagtg--gagttttttcgtgtatacccgc--
|||| |||||||| ||||||||||||||||||||| | |||||||| || ||||| ||||||||||||||||| |||||||||||||| || ||||||||||||||||||| |   | ||| ||| | || | ||||| ||  |  ||    | |   |  |   ||   ||   |||    ||  | | |  |||    |   
TCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATAGTAACGTATTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCTATAgtgagttggatcc---caccacttc-acgcgttcttccgtgccttgtcgaaatgaattgcttgtttgttgtgtctgtgccatgtcctatggactatgatggtgt

upper sequence: LOC_Os01g62244.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G434519_T01 (Zea mays), 5'ss of exon 2
TCGCGAAGCACCCCGTGGATGGGTTCTCGGCTGGGTTAGTCGACGACAGCAACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATAgtgagttggattctctctccaattcgatgcatgcttccatgaatcatctgcctcatccgtgttcatgccatgcgagtggagttttt--tcgtgtatacccgc-
|| |||||||||| ||||||||||||||  ||||| | |||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||  ||| |||||    |||  | || ||||||||||  |  ||    | |   |  |   ||   ||   ||| | |      | |  ||     |  
TCTCGAAGCACCCGGTGGATGGGTTCTCTACTGGGCTGGTCGACGACAGCAATGTCTTCGAGTGGCAGGTCACCATCATCGGACCGCCTGACACCCTATAgtgagtcagatcctctcc---atttcaagcgtgcttccatgccttgtcaagatgaattgcttgtttgttgtgtcggtgcaatgagcaatggactacgatggtg

upper sequence: LOC_Os01g62244.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G085600_T03 (Zea mays), 5'ss of exon 2
TCGCGAAGCACCCCGTGGATGGGTTCTCGGCTGGGTTAGTCGACGACAGCAACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATAgtgagttggattctctctccaattcgatgcatgcttccatgaatcatctgcctcatccgtgttcatgccatgcgagtg--gagttttttcgtgtatacccgc-
||||||||||||| |||||||||||||| |||||| | |||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||  ||| |||||    |||  | || ||||||||||  |  ||    | |   |  |   ||   ||   |||    |     | |  ||     |  
TCGCGAAGCACCCGGTGGATGGGTTCTCTGCTGGGCTGGTCGACGACAGCAATGTCTTCGAGTGGCAGGTCACCATCATCGGACCGCCTGACACCCTATAgtgagtcagatcctctcc---atttcaagcgtgcttccatgccttgtcaagatgaattgcttgtttgttgtgtcggtgccacgagcaatggactacgatggtg

upper sequence: LOC_Os01g62244.1 (Oryza sativa), 5'ss of exon 2
lower sequence: EDP03036 (Chlamydomonas reinhardtii), 5'ss of exon 2
TCGCGAAGCACCCCGTGGATGGGTTCTCGGCTGGGTTAGTCGACGACAGCAACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATAgtgagttggattctctctccaattcgatgcatgcttccatgaatcatctgcctcatccgtgttcatgccatgcgagtggagttttttcgtgtatacccgc-----
|| | | | ||||||||||||| |||||||||||  ||||||| || |||||||| ||||||||||||||||| ||||| || || || || || || |||| |||| |     |    |    ||  ||  ||| || ||   | | | | |  | | |   |  | |  |    |    ||  || || |   |  |      
TCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATAGCAACGTGTTCGAGTGGCAGGTCACCATCATTGGGCCCCCGGAGACACTCTAgtaagtttggaagccatgacgcggcg--gctcgctgccgtgggcc-tttactttgtgc-tacccgggacgagttt-tcattttgctttgtttgggctagggagag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33689998|gb|CF318237.1|CF318237
EST:     AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATA                         TGATGGAGGTTAC-TTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
genomic: AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATAgtgagttgga ... ttattttcagTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
EST: gi|58588737|gb|CF987045.1|CF987045
EST:     AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCGGTA                         TGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
genomic: AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATAgtgagttgga ... ttattttcagTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
EST: gi|33803960|gb|CF327856.1|CF327856
EST:     AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATA                         TGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
genomic: AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATAgtgagttgga ... ttattttcagTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
EST: gi|86904971|gb|CI289118.1|CI289118
EST:     AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATA                         TGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
genomic: AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATAgtgagttgga ... ttattttcagTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
EST: gi|218503159|gb|FG952517.1|FG952517
EST:     CCTGACACCCTATA                         TGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
genomic: CCTGACACCCTATAgtgagttgga ... ttattttcagTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
EST: gi|88334977|gb|CI648752.1|CI648752
EST:     AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATA                         TGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
genomic: AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATAgtgagttgga ... ttattttcagTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
EST: gi|569797|gb|D40646.1|D40646
EST:     AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATA                         TGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
genomic: AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATAgtgagttgga ... ttattttcagTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
EST: gi|33663070|gb|CF294037.1|CF294037
EST:     AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATA                         TGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
genomic: AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATAgtgagttgga ... ttattttcagTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
EST: gi|570100|gb|D40949.1|D40949
EST:     AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATA                         TNATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
genomic: AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATAgtgagttgga ... ttattttcagTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
EST: gi|88327290|gb|CI645067.1|CI645067
EST:     AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATA                         TGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
genomic: AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATAgtgagttgga ... ttattttcagTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
EST: gi|33687166|gb|CF315405.1|CF315405
EST:     AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATA                         TGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
genomic: AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATAgtgagttgga ... ttattttcagTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
EST: gi|572403|gb|D41914.1|D41914
EST:     AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATA                         TGATGGAGGTTACTTTAATGCAATAATGAG-TTTCCACAGAATTATCCTAA
genomic: AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATAgtgagttgga ... ttattttcagTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
EST: gi|33691223|gb|CF319462.1|CF319462
EST:     AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATA                         TGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
genomic: AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATAgtgagttgga ... ttattttcagTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
EST: gi|571730|gb|D41241.1|D41241
EST:     AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATA                         TGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
genomic: AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATAgtgagttgga ... ttattttcagTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
EST: gi|88343130|gb|CI641656.1|CI641656
EST:     AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATA                         TGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
genomic: AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATAgtgagttgga ... ttattttcagTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
EST: gi|33663820|gb|CF294787.1|CF294787
EST:     AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATA                         TGATGGAGGTGACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
genomic: AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATAgtgagttgga ... ttattttcagTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
EST: gi|33682530|gb|CF310769.1|CF310769
EST:     AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATA                         TGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
genomic: AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATAgtgagttgga ... ttattttcagTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
EST: gi|88327435|gb|CI645222.1|CI645222
EST:     AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATA                         TGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
genomic: AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATAgtgagttgga ... ttattttcagTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
EST: gi|33680805|gb|CF309044.1|CF309044
EST:     AACGTCTTCGAGCGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATA                         TGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
genomic: AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATAgtgagttgga ... ttattttcagTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
EST: gi|88332627|gb|CI651787.1|CI651787
EST:     AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATA                         TGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
genomic: AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATAgtgagttgga ... ttattttcagTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
EST: gi|33810888|gb|CF331335.1|CF331335
EST:     AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATA                         TGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
genomic: AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATAgtgagttgga ... ttattttcagTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
EST: gi|33693885|gb|CF322124.1|CF322124
EST:     AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATA                         TGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
genomic: AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATAgtgagttgga ... ttattttcagTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
EST: gi|33655965|gb|CF278579.1|CF278579
EST:     AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATA                         TGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
genomic: AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATAgtgagttgga ... ttattttcagTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
EST: gi|218483069|gb|FG969518.1|FG969518
EST:     AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATA                         TGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
genomic: AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATAgtgagttgga ... ttattttcagTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
EST: gi|88347542|gb|CI637482.1|CI637482
EST:     AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATA                         TGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
genomic: AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATAgtgagttgga ... ttattttcagTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
EST: gi|88302898|gb|CI668744.1|CI668744
EST:     AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATA                         TGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
genomic: AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATAgtgagttgga ... ttattttcagTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
EST: gi|88362508|gb|CI623848.1|CI623848
EST:     AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATA                         TGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
genomic: AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATAgtgagttgga ... ttattttcagTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
EST: gi|570083|gb|D40932.1|D40932
EST:     AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATA                         TGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
genomic: AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATAgtgagttgga ... ttattttcagTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
EST: gi|218494870|gb|FG960750.1|FG960750
EST:     AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATA                         TGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
genomic: AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATAgtgagttgga ... ttattttcagTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
EST: gi|88396391|gb|CI598503.1|CI598503
EST:     AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATA                         TGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
genomic: AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATAgtgagttgga ... ttattttcagTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
EST: gi|571742|gb|D41253.1|D41253
EST:     AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATA                         TGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
genomic: AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATAgtgagttgga ... ttattttcagTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
EST: gi|570188|gb|D41037.1|D41037
EST:     AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATA                         TGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
genomic: AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATAgtgagttgga ... ttattttcagTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
EST: gi|218478108|gb|FG955329.1|FG955329
EST:     AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATA                         TGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
genomic: AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATAgtgagttgga ... ttattttcagTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
EST: gi|218494462|gb|FG953577.1|FG953577
EST:     AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATA                         TGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
genomic: AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATAgtgagttgga ... ttattttcagTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
EST: gi|88327593|gb|CI646786.1|CI646786
EST:     AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATA                         TGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
genomic: AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATAgtgagttgga ... ttattttcagTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
EST: gi|88310491|gb|CI659281.1|CI659281
EST:     AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATA                         TGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
genomic: AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATAgtgagttgga ... ttattttcagTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
EST: gi|218494770|gb|FG953209.1|FG953209
EST:     AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATA                         TGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
genomic: AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATAgtgagttgga ... ttattttcagTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
EST: gi|33656745|gb|CF279359.1|CF279359
EST:     AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATA                         TGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
genomic: AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATAgtgagttgga ... ttattttcagTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
EST: gi|218505567|gb|FG957426.1|FG957426
EST:     AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATA                         TGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
genomic: AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATAgtgagttgga ... ttattttcagTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
EST: gi|569829|gb|D40678.1|D40678
EST:     AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATA                         TGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
genomic: AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATAgtgagttgga ... ttattttcagTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
EST: gi|88396389|gb|CI598501.1|CI598501
EST:     AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATA                         TGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
genomic: AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATAgtgagttgga ... ttattttcagTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
EST: gi|88765871|gb|CI774961.1|CI774961
EST:     AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATA                         TGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
genomic: AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATAgtgagttgga ... ttattttcagTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
EST: gi|58590948|gb|CF989256.1|CF989256
EST:     AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATA                         TGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
genomic: AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATAgtgagttgga ... ttattttcagTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
EST: gi|88403835|gb|CI611490.1|CI611490
EST:     AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATA                         TGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
genomic: AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATAgtgagttgga ... ttattttcagTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
EST: gi|58592613|gb|CF990921.1|CF990921
EST:     AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATA                         TGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA
genomic: AACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATAgtgagttgga ... ttattttcagTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCGCGAAGCACCCCGTGGATGGGTTCTCGGCTGGGTTAGTCGACGACAGCAACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATAgtgagttggattctctctccaattcgatgcatgcttccatgaatcatctgcctcatccgtgttcatgccatgcgagtggagttttttcgtgtatacccgc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctcc