1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ACAATAAAGGAACACCAAAAAAATGGGTAAGAAAGGAAATTGGTTCAGTGCTGTCAAGAAAGTCTTCAGCTCATCCGATCCAGATGGGAGGGAAGCTAAGgtatgccaaaacttatctgcttcctcaataaatcgctatacttgtcataaaaattctccttgcttcaatatatatcttttgattaccatgaag
species | Oryza sativa |
transcript | LOC_Os01g61720.9 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTGTCAAGAAAGTCTTCAGCTCATCCGATCCAGATGGGAGGGAAGCTAAG ATCGAGAAGGCGGACAAGTCGAGATCCAGGAGGAAATGGCCATTTGGAAAGEST: gi|88360261|gb|CI611980.1|CI611980
genomic: CTGTCAAGAAAGTCTTCAGCTCATCCGATCCAGATGGGAGGGAAGCTAAGgtatgccaaa ... taccatgaagATCGAGAAGGCGGACAAGTCGAGATCCAGGAGGAAATGGCCATTTGGAAAG
EST: CTGTCAAGAAAGTCTTCAGCTCATCCGATCCAGATGGGAGGGAAGCTAAG ATCGAGAAGGCGGACAAGTCGAGATCCAGGAGGAAATGGCCATTTGGAAAGEST: gi|58670378|gb|CK059064.1|CK059064
genomic: CTGTCAAGAAAGTCTTCAGCTCATCCGATCCAGATGGGAGGGAAGCTAAGgtatgccaaa ... taccatgaagATCGAGAAGGCGGACAAGTCGAGATCCAGGAGGAAATGGCCATTTGGAAAG
EST: GGGAAGCTAAG ATCGAGAAGGCGGACAAGTCGAGATCCAGGAGTGAAATGGCCATTTGGAAA
genomic: GGGAAGCTAAGgtatgccaaa ... taccatgaagATCGAGAAGGCGGACAAGTCGAGATCCAGGAG-GAAATGGCCATTTGGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAATAAAGGAACACCAAAAAAATGGGTAAGAAAGGAAATTGGTTCAGTGCTGTCAAGAAAGTCTTCAGCTCATCCGATCCAGATGGGAGGGAAGCTAAGgtatgccaaaacttatctgcttcctcaataaatcgctatacttgtcataaaaattctccttgcttcaatatatatcttttgattaccatgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG