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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGCCATCCTCGACTGGGGAGACTACTACTTCCTCGTCCTCTCGCCGGACGCCGCCAAGAGCCCGGCCAAATACTGGCCGGCCAATCCCGGCATCTGCAAgtaagcactagcttagatcacctcgatctctttgcaagtactgtacctgcatattcgccttttttccttcgagagatatttctcatttagctttgcccat...

Basic information

species Oryza sativa
transcript LOC_Os01g61610.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g61610.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G058024_T02 (Zea mays), 5'ss of exon 2
GCGCCATCCTCGACTGGGGAGACTACTACTTCCTCGTCCTCTCGCCGGACGCCGCCAAGAGCCCGGCCAAATACTGGCCGGCCAATCCCGGCATCTGCAAgtaagcactagcttagatcacctcgatctctttgcaagtactgtacctgcatattcgccttttttccttcgagagatatttctcatttagctttgcccat-
||||| ||||||||||||| ||||||| |||||||  |||| ||||||| || ||||||||| || |||  | |||||||||| | ||| ||| ||||||||| |       || |||    || |    | |||  |   |  |  ||    |  ||   |  |   | |||   ||   |      |  |     | | 
GCGCCGTCCTCGACTGGGGCGACTACTTCTTCCTCCACCTCGCGCCGGAGGCGGCCAAGAGCACGCCCAGGTTCTGGCCGGCCCAGCCCAGCAACTGCAAgtacgtgtacctttcgattttttctactgttctgcgtgc-ttccagatgatcctaagctgatggttaattgagctgtagcgcgtgcccatgtgcatgcctt

upper sequence: LOC_Os01g61610.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G122280_T02 (Zea mays), 5'ss of exon 2
GCGCCATCCTCGACTGGGGAGACTACTACTTCCTCGTCCTCTCGCCGGACGCCGCCAAGAGCCCGGCCAAATACTGGCCGGCCAATCCCGGCATCTGCAAgtaagcactagcttagatcacct--cgatctctttgcaagtactgtacctgcatattcgccttttttcct--tcgagagatatttctcatttagctttgcccat
|||||  |||||||||||| ||||||| |||||||  |||| ||||||| || ||||||||| || |||| | ||||||||||   ||||||| ||||||||| || |      | ||  | |  |  |||  ||| ||  |   |   ||||  | || ||     ||     |   |      ||||   |     |     
GCGCCGCCCTCGACTGGGGCGACTACTTCTTCCTCCACCTCGCGCCGGAGGCGGCCAAGAGCACGCCCAAGTTCTGGCCGGCCGTGCCCGGCAACTGCAAgtacgcccacttccaaatttcgtacccttcttcttggaaaaaaatttgttgca-gtccggctgcaaaccaggctgtttgcagcccctcacaaaaaggagga---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58689249|gb|CK077936.1|CK077936
EST:     GCCGCCAAGAGCCCGGCCAAATACTGGCCGGCCAATCCCGGCATCTGCAA                         GGAGGTGTCCGAGGAGTACGGGAGAGAGGTGATCAAGCTGTGCGAGCGGCT
genomic: GCCGCCAAGAGCCCGGCCAAATACTGGCCGGCCAATCCCGGCATCTGCAAgtaagcacta ... ctgcgtgcagGGAGGTGTCCGAGGAGTACGGGAGAGAGGTGATCAAGCTGTGCGAGCGGCT
EST: gi|58693225|gb|CK081912.1|CK081912
EST:     GCCGCCAAGAGCCCGGCCAAATACTGGCCGGGCAATCCCGGCATCTGCAA                         GGAGGTGTCCGAGGAG
genomic: GCCGCCAAGAGCCCGGCCAAATACTGGCCGGCCAATCCCGGCATCTGCAAgtaagcacta ... ctgcgtgcagGGAGGTGTCCGAGGAG
EST: gi|58607588|gb|CK035621.1|CK035621
EST:     GCCGCCAAGAGCCCGGCCAAATACTGGCCGGCCAATCCCGGCATCTGCAA                         GGAGGTGTCCGAGGAGTACGGGAGAGAGGTGATCAAGCTGTGCGAGCGGCT
genomic: GCCGCCAAGAGCCCGGCCAAATACTGGCCGGCCAATCCCGGCATCTGCAAgtaagcacta ... ctgcgtgcagGGAGGTGTCCGAGGAGTACGGGAGAGAGGTGATCAAGCTGTGCGAGCGGCT