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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCTTCAAGCGCCGCAATGGCGGCCGCAACAAGCACGGTCGCGGCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGgtaaggcgaagcgaatccccttttgccctctctcgttgcgcgcgaggcacccactggatctctgtgttgatttgggaatctttgctttgggtgcgggacag

Basic information

species Oryza sativa
transcript LOC_Os01g60790.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g60790.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM5G827266_T03 (Zea mays), 5'ss of exon 2
ACCTTCAAGCGCCGCAATGGCGGCCGCAACAAGCACGGTCGCGGCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGgtaaggcgaagcgaatccccttttgccctctctcgttgcgcgcgaggcacccactggatctctgtgttgatttgggaatctttgctttgggtgcgggacag
||||||||||||||||| ||||||||||||||||| || ||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| ||| || ||   ||| |  | ||| |   |  || | |   |   ||||    | |       ||||| | |  ||  | | |   |           
ACCTTCAAGCGCCGCAACGGCGGCCGCAACAAGCATGGCCGCGGTCACGTCAAGTACATCCGGTGCTCAAACTGCGCCAAGTGCTGCCCCAAGgtgaggagatgcc--tccacagtcgcctttctt--tttctcttcatttacccgtgtggtggagtccttgatcttg--atgctcgttacag-----------

upper sequence: LOC_Os01g60790.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA04G39940.1 (Glycine max), 5'ss of exon 2
ACCTTCAAGCGCCGCAATGGCGGCCGCAACAAGCACGGTCGCGGCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGgtaaggcgaagcgaatccccttttgccctctctcgttgcgcgcgaggcacccactggatctctgtgttgatttgggaatctttgctttgggtgcgggacag
|| ||||||||| | ||||| || |||||||| ||||| |||||||||||||||| ||| || ||||||||||||| ||| |||||||| |||||    |  |    |    |||   || ||  |  ||           |  |      ||  | |   ||||| |  || | ||       |     ||||
ACTTTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTCAAGTTCATTCGATGCTCCAACTGCGGCAAATGCTGCCCTAAGgtt---cttatttcactttcttcaaccttccttttttttttatttt-tatgcggcaattcaat-taaagattttgagatttgtgaaaaaaattaataacag

upper sequence: LOC_Os01g60790.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA06G14950.1 (Glycine max), 5'ss of exon 2
ACCTTCAAGCGCCGCAATGGCGGCCGCAACAAGCACGGTCGCGGCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGgtaagg-cgaagcgaatccccttttgccctc---tctcgttgcgcgcgaggcacccactggatctctgtgttgatttgggaatctttgctttgggtgcgggacag
|| || |||||| | ||||| || |||||||| ||||| || ||||||||||||| ||| || ||||||||||||| ||| ||||| || |||||  |  |  |    |    |||   |  ||   | |  ||    |||      | | |   | | | |   ||||||  ||    |    |         ||||
ACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTCAAGTTCATTCGATGCTCCAACTGCGGCAAATGCTGTCCTAAGgttcgttcttatttcactttcttaaacgttcaaatttttttttctgcggcaattcaattaatttttttttgcgatttgtaaaaaaataaaataataata--acag

upper sequence: LOC_Os01g60790.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA05G21370.1 (Glycine max), 5'ss of exon 2
ACCTTCAAGCGCCGCAATGGCGGCCGCAACAAGCACGGTCGCGGCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGgtaa--ggcgaagcgaatccccttttgccctctctcgttgcgcgcgaggcacccactggatctctgtgttgatttgggaatctttgctttgggtgcgggacag
|| ||||||||| | || || || |||||||| ||||| || ||||| ||||| | |||||| ||||||||||||| ||| |||||||||||||| |    | |      |  | |  | ||  ||   | |  | ||||||||     |  |  | |   || |  |     | | ||||      | |  ||||
ACATTCAAGCGCAGGAACGGAGGTCGCAACAAACACGGCCGTGGCCATGTCAAATTCATCCGATGCTCCAACTGCGGCAAATGCTGCCCCAAGgttattatctatttcgctttcttccttccaccttcagatttgtgcgaggcatt---tcaaattttcaattaacct-----tttgtgctcgccccgtgaaacag

upper sequence: LOC_Os01g60790.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA14G38950.1 (Glycine max), 5'ss of exon 2
ACCTTCAAGCGCCGCAATGGCGGCCGCAACAAGCACGGTCGCGGCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGgtaaggcgaagcgaatccccttttgccctctctcgttgcgcgcgaggcacccactggatctctgtgttgatttgggaatctttgctttgggtgcgggacag
|| ||||||||| | ||||| || |||||||| ||||| |||||||| ||||| | |||||| |||||||||||||  || ||||||||||||||       |          |||  |  |||  |      |            |      | |   || |||    ||  |    |               
ACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCATGTCAAATTCATCCGATGCTCCAACTGCGGAAAATGCTGCCCCAAGgttgtttttattattatttatttcactttcttccacc-ttcaaattttttgtgcgaagcatttcaattaattgaaaaaaataaaataataacag-------

upper sequence: LOC_Os01g60790.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA02G40660.1 (Glycine max), 5'ss of exon 2
ACCTTCAAGCGCCGCAATGGCGGCCGCAACAAGCACGGTCGCGGCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGgtaa--ggcgaagcgaatcc----ccttttgccctctctcgttgcgcgcgaggcacc-cactggatctctgtgttgatttgggaatctttgctt-tgggtgcgggacag
|| ||||||||| | ||||| || |||||||| ||||| |||||||||||||| | |||||| ||||||||||| | ||| ||||| ||||||||         |     ||     ||||      | | |  ||  |    ||||    || | || || | |   | |||| ||||       | |   |     ||||
ACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTCAAATTCATCCGGTGCTCCAACTGTGGCAAATGCTGTCCCAAGgtttttatttcactttctcttaaaccttcaattttttttttttttgttttaggcgtttcaattgacctttttac-gctttgtgaataaaaaaatattattaaaaaacag

upper sequence: LOC_Os01g60790.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA17G18200.1 (Glycine max), 5'ss of exon 2
ACCTTCAAGCGCCGCAATGGCGGCCGCAACAAGCACGGTCGCGGCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGgt--------aaggcgaagcgaatccccttttgccctctctcgttgcgcgcgaggcacccactgg--atctctgtgttgatttgggaatcttt---gctttgggtgcgggacag
|| ||||||||| | ||||| || |||||||| ||||| || ||||||||||| | |||||| ||||||||||| | ||| ||||||||||||||        |          |      ||| ||  ||| || |    |   ||       |  |  || ||  | || |      || ||||   |||     || |  ||||
ACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTCAAATTCATCCGATGCTCCAACTGTGGCAAATGCTGCCCCAAGgtttttttttattttattattatcattatttcgctttctttcttccaccttcagatttgtgcgaggcatttcaattttcaacaactaaccttttgtgctcgctctgtgaaacag

upper sequence: LOC_Os01g60790.1 (Oryza sativa), 5'ss of exon 2
lower sequence: Vv06s0004g07940.t01 (Vitis vinifera), 5'ss of exon 2
ACCTTCAAGCGCCGCAATGGCGGCCGCAACAAGCACGGTCGCGGCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGgtaaggcgaagcgaatcccctt---ttgccctctctcgttgcgcgcgaggcacccactggatctctgtgttgatttgggaatctttgctttgggtgcgggacag
|| ||||||||  | ||||| || |||||||||||||| |||||||||||||||| ||| |||||||||||||| | ||| |||||||| ||||||                | |   ||  ||| | |  |    ||   ||   ||     || ||  |    ||   ||||      |||||  |         
ACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAGgtactttttcttttgcttgcctcaattttcctttattttctttcgtttggtggccgagaaatatccataaccat--aggaaagaaaactttgaatctttttt--

upper sequence: LOC_Os01g60790.1 (Oryza sativa), 5'ss of exon 2
lower sequence: Vv13s0067g02700.t01 (Vitis vinifera), 5'ss of exon 3
ACCTTCAAGCGCCGCAATGGCGGCCGCAACAAGCACGGTCGCGGCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGgtaaggcgaagcgaatccccttttgccctctctcgttgcgcgcgaggcacccactggatctctgtgttgatttgggaatctttgctttgggtgcgggacag
|| ||||||||| | || |||||||||||||||||||| || || || ||||||| |||||||||||| |||||||  || |||||||| |||||   ||        |   ||  |    |   |   |      |   ||     || ||   || ||   ||||| | | | || |  |            
ACGTTCAAGCGCAGAAACGGCGGCCGCAACAAGCACGGCCGTGGACATGTCAAGTTCATCCGCTGCTCAAACTGCGGAAAATGCTGCCCAAAGgtctcgctccatttgtattctgatttagtggttttgtatcaaagcatcagtagttgaattggtgcgt--gtttggaattgtgtgatcag------------

upper sequence: LOC_Os01g60790.1 (Oryza sativa), 5'ss of exon 2
lower sequence: EFJ33618 (Selaginella moellendorffii), 5'ss of exon 1
---ACCTTCAAGCGCCGCAATGGCGGCCGCAACAAGCACGGTCGCGGCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGgtaaggcgaagcgaatccccttttgccctctctcgttgcgcgcgaggcacccactggatctctgtgttgatttgggaatctttgctttgggtgcgggacag
   ||  ||||||| || ||||||||||||||||||||||| |||||||| ||| |    ||||| |||||||| || |     |||  |||||||||| | | |     ||| |  ||||||  |    | || |     | | ||                                                  
ATGACTGTCAAGCGGCGGAATGGCGGCCGCAACAAGCACGGCCGCGGCCATGTCGATCCAATCCGGTGCTCCAATTGTGGGCGCTGCGTCCCCAAGgtatgac-atctagatctctctttgccggcgga-gctgagatttcgcctccag------------------------------------------------

upper sequence: LOC_Os01g60790.1 (Oryza sativa), 5'ss of exon 2
lower sequence: EFJ36971 (Selaginella moellendorffii), 5'ss of exon 1
---ACCTTCAAGCGCCGCAATGGCGGCCGCAACAAGCACGGTCGCGGCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGgtaaggcgaagcgaatccccttttgccctctctcgttgcgcgcgaggcacccactggatctctgtgttgatttgggaatctttgctttgggtgcgggacag
   ||  ||||||| || ||||||||||||||||||||||| |||||||| ||| |    ||||| |||||||| || |     |||  |||||||||| | |     ||       ||| || |||||| ||||  |||  ||    | |    |||                                       
ATGACTGTCAAGCGGCGGAATGGCGGCCGCAACAAGCACGGCCGCGGCCATGTCGATCCAATCCGGTGCTCCAATTGTGGGCGCTGCGTCCCCAAGgtatgacatctagagga----ttttccatctctctttgccggcggagctgagatttcgcctccag------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58689839|gb|CK078526.1|CK078526
EST:     GCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAG                         GACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
genomic: GCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGgtaaggcgaa ... tgcgggacagGACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
EST: gi|86529528|gb|CI169734.1|CI169734
EST:     GCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAG                         GACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
genomic: GCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGgtaaggcgaa ... tgcgggacagGACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
EST: gi|87037440|gb|CI192062.1|CI192062
EST:     TCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAG                         GACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
genomic: TCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGgtaaggcgaa ... tgcgggacagGACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
EST: gi|88207575|gb|CI207424.1|CI207424
EST:     GCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAG                         GACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
genomic: GCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGgtaaggcgaa ... tgcgggacagGACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
EST: gi|86530521|gb|CI170727.1|CI170727
EST:     GCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAG                         GACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
genomic: GCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGgtaaggcgaa ... tgcgggacagGACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
EST: gi|33795579|gb|CF323659.1|CF323659
EST:     GCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAG                         GACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
genomic: GCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGgtaaggcgaa ... tgcgggacagGACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
EST: gi|86425643|gb|CI070740.1|CI070740
EST:     GCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAG                         GACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
genomic: GCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGgtaaggcgaa ... tgcgggacagGACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
EST: gi|86423700|gb|CI062461.1|CI062461
EST:     GCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAG                         GACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
genomic: GCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGgtaaggcgaa ... tgcgggacagGACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
EST: gi|87025450|gb|CI267816.1|CI267816
EST:     CAACTGCGCCAAGTGCTGCCCCAAG                         GACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
genomic: CAACTGCGCCAAGTGCTGCCCCAAGgtaaggcgaa ... tgcgggacagGACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
EST: gi|87014635|gb|CI269342.1|CI269342
EST:     GCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAG                         GACAAGGCGGTCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
genomic: GCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGgtaaggcgaa ... tgcgggacagGACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
EST: gi|66915362|gb|CX102210.1|CX102210
EST:     GCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAG                         GACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
genomic: GCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGgtaaggcgaa ... tgcgggacagGACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
EST: gi|58594740|gb|CF993048.1|CF993048
EST:     GCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAG                         GACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
genomic: GCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGgtaaggcgaa ... tgcgggacagGACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
EST: gi|88240155|gb|CI239317.1|CI239317
EST:     GCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAG                         GACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
genomic: GCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGgtaaggcgaa ... tgcgggacagGACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
EST: gi|88211886|gb|CI211526.1|CI211526
EST:     GCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAG                         GACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
genomic: GCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGgtaaggcgaa ... tgcgggacagGACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
EST: gi|218503117|gb|FG965412.1|FG965412
EST:     GCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAG                         GACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
genomic: GCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGgtaaggcgaa ... tgcgggacagGACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
EST: gi|88206854|gb|CI205170.1|CI205170
EST:     GCTGCCCCAAG                         GACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
genomic: GCTGCCCCAAGgtaaggcgaa ... tgcgggacagGACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
EST: gi|88242199|gb|CI242048.1|CI242048
EST:     GCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAG                         GACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
genomic: GCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGgtaaggcgaa ... tgcgggacagGACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
EST: gi|88209059|gb|CI208908.1|CI208908
EST:     GCTGCCCCAAG                         GACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
genomic: GCTGCCCCAAGgtaaggcgaa ... tgcgggacagGACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
EST: gi|218500719|gb|FG955415.1|FG955415
EST:     GCTGCTCCAACTGCGCCAAGTGCTGCCCCAAG                         GACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
genomic: GCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGgtaaggcgaa ... tgcgggacagGACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
EST: gi|86526546|gb|CI166752.1|CI166752
EST:     GCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAG                         GACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
genomic: GCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGgtaaggcgaa ... tgcgggacagGACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
EST: gi|38475607|gb|CF959740.1|CF959740
EST:     CTGCTCCAACTGCGCCAAGTGCTGCCCCAAG                         GACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGGCGCC
genomic: CTGCTCCAACTGCGCCAAGTGCTGCCCCAAGgtaaggcgaa ... tgcgggacagGACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
EST: gi|88205411|gb|CI205260.1|CI205260
EST:     GCTGCCCCAAG                         GACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
genomic: GCTGCCCCAAGgtaaggcgaa ... tgcgggacagGACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
EST: gi|86511192|gb|CI153825.1|CI153825
EST:     GCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAG                         GACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
genomic: GCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGgtaaggcgaa ... tgcgggacagGACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
EST: gi|58591433|gb|CF989741.1|CF989741
EST:     GCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAG                         GACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
genomic: GCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGgtaaggcgaa ... tgcgggacagGACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
EST: gi|88211899|gb|CI211539.1|CI211539
EST:     GCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAG                         GACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
genomic: GCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGgtaaggcgaa ... tgcgggacagGACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
EST: gi|86423419|gb|CI062180.1|CI062180
EST:     GCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAG                         GACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
genomic: GCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGgtaaggcgaa ... tgcgggacagGACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
EST: gi|88902972|gb|CI088510.1|CI088510
EST:     GCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAG                         GACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
genomic: GCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGgtaaggcgaa ... tgcgggacagGACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
EST: gi|86423494|gb|CI062255.1|CI062255
EST:     GCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAG                         GACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC
genomic: GCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGgtaaggcgaa ... tgcgggacagGACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 72 (downstream exon)
Score: 68

ACCTTCAAGCGCCGCAATGGCGGCCGCAACAAGCACGGTCGCGGCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGgtaaggcgaa ... tgcgggacagGACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACCTTCAAGCGCCGCAATGGCGGCCGCAACAAGCACGGTCGCGGCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGgtaaggcgaagcgaatccccttttgccctctctcgttgcgcgcgaggcacccactggatctctgtgttgatttgggaatctttgctttgggtgcgggacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC