1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CCTTACTTGATGAAAAGGTCTGAGATTATTGAGATAGTTGGAGCCAGTGATATCATCTTTGCTTTATCACAGTCAGGAGTATGTGCTGCATTCAGCAGAGgtacaactttcgataatgattggtcatgtactgatgttataaattaccattgaattctgagatgtatttgttttag
species | Oryza sativa |
transcript | LOC_Os01g60200.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TATCATCTTTGCTTTATCACAGTCAGGAGTATGTGCTGCATTCAGCAGAG TCTCAAACCAGCGGATTTGCTTTCTGAATGGAAGACCAGATGAAGTCATTCEST: gi|33795652|gb|CF323696.1|CF323696
genomic: TATCATCTTTGCTTTATCACAGTCAGGAGTATGTGCTGCATTCAGCAGAGgtacaacttt ... tttgttttagTCTCAAACCAGCGGATTTGCTTTCTGAATGGAAGACCAGATGAAGTCATTC
EST: TATCATCTTTGCTTTATCACAGTCAGGAGTATGTGCTGCATTCAGCAGAG TCTCAAACCAGCGGATTTGCTTTCTGAATGGAAGACCAGATGAAGTCATTCEST: gi|58677476|gb|CK066163.1|CK066163
genomic: TATCATCTTTGCTTTATCACAGTCAGGAGTATGTGCTGCATTCAGCAGAGgtacaacttt ... tttgttttagTCTCAAACCAGCGGATTTGCTTTCTGAATGGAAGACCAGATGAAGTCATTC
EST: TATCATCTTTGCTTTATCACAGTCAGGAGTATGTGCTGCATTCAGCAGAG TCTCAAACCAGCGGATTTGCTTTCTGAATGGAAGACCAGATGAAGTCATTCEST: gi|58596250|gb|CK006778.1|CK006778
genomic: TATCATCTTTGCTTTATCACAGTCAGGAGTATGTGCTGCATTCAGCAGAGgtacaacttt ... tttgttttagTCTCAAACCAGCGGATTTGCTTTCTGAATGGAAGACCAGATGAAGTCATTC
EST: TATCATCTTTGCTTTATCACAGTCAGGAGTATGTGCTGCATTCAGCAGAG TCTCAAACCAGCGGATTTGCTTTCTGAATGGAAGACCAGATGAAGTCATTCEST: gi|58599623|gb|CK010151.1|CK010151
genomic: TATCATCTTTGCTTTATCACAGTCAGGAGTATGTGCTGCATTCAGCAGAGgtacaacttt ... tttgttttagTCTCAAACCAGCGGATTTGCTTTCTGAATGGAAGACCAGATGAAGTCATTC
EST: ATCATCTTTGCTTTATCACAGTCAGGAGTAGTGTGCTGCATTCAGCAGAG TCTCAAACCAGCGGATTTGCTTTCTGAATGGAAGACCAGATGAAGTCATTC
genomic: ATCATCTTTGCTTTATCACAGTCAGGAGTA-TGTGCTGCATTCAGCAGAGgtacaacttt ... tttgttttagTCTCAAACCAGCGGATTTGCTTTCTGAATGGAAGACCAGATGAAGTCATTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTTACTTGATGAAAAGGTCTGAGATTATTGAGATAGTTGGAGCCAGTGATATCATCTTTGCTTTATCACAGTCAGGAGTATGTGCTGCATTCAGCAGAGgtacaactttcgataatgattggtcatgtactgatgttataaattaccattgaattctgagatgtatttgttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC