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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACAGGGGTTCAGGGAAGTACGAGGCGCACCTGTGGGACAAGCAAGGCTGGAACCCAAACCAGACAAGGAAGAGAGGCAGGCAAGgtgagaaatacaaattctacgagcctcgggtctactatgttttctgcagctaatgggacaagttgattgccattttgtttttctttgttctctctttctt...

Basic information

species Oryza sativa
transcript LOC_Os01g59780.1
intron # 2
splice site 5'
intron type U2

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCACAGGGGTTCAGGGAAGTACGAGGCGCACCTGTGGGACAAGCAAGGCTGGAACCCAAACCAGACAAGGAAGAGAGGCAGGCAAGgtgagaaatacaaattctacgagcctcgggtctactatgttttctgcagctaatgggacaagttgattgccattttgtttttctttgttctctctttctt

- - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG