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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTATGCACAACTGTTTTAAGGAGACTGCTGAGACATTCTTATCCAGCACTGGTTTGGAACTGCCTGTTGATTACACTGTAGATGTAGATAAGCGTAAAGgtatttattcacatatcaacactgaatcttgtatctttctttggatgttcaacacttgtaaaattgctgcataagcactttatattgttatgttagttca...

Basic information

species Oryza sativa
transcript LOC_Os01g56820.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g56820.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G085602_T02 (Zea mays), 5'ss of exon 2
CTTATGCACAACTGTTTTAAGGAGACTGCTGAGACATTCTTATCCAGCACTGGTTTGGAACTGCCTGTTGATTACACTGTAGATGTAGATAAGCGTAAAGgtatttattcacatatcaacactgaatcttgtatctttctttggatgttcaacacttgtaaaattgctgcataagcactttatattgttat--gttagttca
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CTTATGCACAACTGTTTTAAAGAGACGGCAGAGGCATTCCTATCTAGCACCGGGTTGAATTTACCTGTCGACTATAGTGTGGATGTGGATAAGCGTAAAGgtatttatttgcaggtcaatactggatctttcctacattattatgttttagggggcgctttacttgtcatatt-gcatgatgaagtactatttgtatgttt-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88396710|gb|CI620043.1|CI620043
EST:     TGGTTTGGAACTGGCTGTTGATTACACTGTAGATGTAGATAAGCGTAAAG                         CGATTTTTAGTTTTGTGTTGGAAGGCCATGCACTGAAGGCTATAGACCTGA
genomic: TGGTTTGGAACTGCCTGTTGATTACACTGTAGATGTAGATAAGCGTAAAGgtatttattc ... tttctttcagCGATTTTTAGTTTTGTGTTGGAAGGCAATGCCCTGAAGGCTATAGACCTGA
EST: gi|40486859|gb|BX898175.1|BX898175
EST:     TGGTTTGGAACTGCCTGTTGATTACACTGTGGATGTAGATAAGCGTAAAG                         CGATTTTTAGTTTTGTGTTGGAAGGCAATGCCCTGAAGGCTATAGACCTGA
genomic: TGGTTTGGAACTGCCTGTTGATTACACTGTAGATGTAGATAAGCGTAAAGgtatttattc ... tttctttcagCGATTTTTAGTTTTGTGTTGGAAGGCAATGCCCTGAAGGCTATAGACCTGA
EST: gi|88428634|gb|CI599350.1|CI599350
EST:     TGGTTTGGAACTGCCTGTTGATTACACTGTAGATGTAGATAAGCGTAAAG                         CGATTTTTAGTTTTGTGTTGGAAGGCAATGCCCTGAAGGCTATAGACCTGA
genomic: TGGTTTGGAACTGCCTGTTGATTACACTGTAGATGTAGATAAGCGTAAAGgtatttattc ... tttctttcagCGATTTTTAGTTTTGTGTTGGAAGGCAATGCCCTGAAGGCTATAGACCTGA
EST: gi|117234957|gb|CT847981.1|CT847981
EST:     TGGTTTGGAACTGCCTGTTGATTACACTGTGGATGTAGATAAGCGTAAAG                         CGATTTTTAGTTTTGTGTTGGAAGGCAATGCCCTGAAGGCTATAGACCTGA
genomic: TGGTTTGGAACTGCCTGTTGATTACACTGTAGATGTAGATAAGCGTAAAGgtatttattc ... tttctttcagCGATTTTTAGTTTTGTGTTGGAAGGCAATGCCCTGAAGGCTATAGACCTGA