Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGAGGCGATCATACTGGGATTCCAGCACTACATCCTGGCGCTGGGCACGGCGGTGATGATCCCGGCGGTGCTGGTGCCCATGATGGGCGGGAGCGACgtgagcgccgccgcggccgcactcttgttgatttcccccaatccattcgccaccacccatggtttgagaactcacttttctgctttctgctgtcgcag

Basic information

species Oryza sativa
transcript LOC_Os01g55500.4
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g55500.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G437859_T03 (Zea mays), 5'ss of exon 2
GGGAGGCGATCATACTGGGATTCCAGCACTACATCCTGGCGCTGGGCACGGCGGTGATGATCCCGGCGGTGCTGGTGCCCATGATGGGCGGGAGCGACgtgagcgcc----gccgcg--gccgcactcttgttgatttcc---cccaatccat-tcgccaccacccatg-gtttgagaactcacttttctgctttctgctgtcgcag---------------------------------
| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| | ||| |||| ||||||||||||||   ||| ||||||  |    |||  |  |||   | ||| ||||   |    ||   ||| |  || || || |  |  |||||   |     | || ||  | ||  | || |                                   
GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGATgtgagcttcctgtgccatgccgccttccgcttcttgaccacagcaccggctccgtgccggcagcatcggtccgtttgctgatgtgatgttttgggtccttttttcccccctttcgcttggggactggtgtcgctgtttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88338897|gb|CI677311.1|CI677311
EST:     CGGCGGTGATGATCCCGGCGGTGCTGGTGCCCATGATGGGCCGGAGCGAC                         GGGGACAGGGTGACGGTGGTGCAGACGCTGCTGTTCGTCACCGCGCATCA-
genomic: CGGCGGTGATGATCCCGGCGGTGCTGGTGCCCATGATGGGCGGGAGCGACgtgagcgccg ... gctgtcgcagGGGGACAGGGTGAGGGTGGTGCAGACGCTGCTGTTCGTCACCG-GCATCAA
EST: gi|88692881|gb|CI736456.1|CI736456
EST:     CGGCGGTGATGATCCCGGCGGTGCTGGTGCCCATGATGGGCGGGAGCGAC                         GGGGACAGGGTGAGGGTGGTGCAGACGCTGCTGTTCGTCACCGGCATCAAC
genomic: CGGCGGTGATGATCCCGGCGGTGCTGGTGCCCATGATGGGCGGGAGCGACgtgagcgccg ... gctgtcgcagGGGGACAGGGTGAGGGTGGTGCAGACGCTGCTGTTCGTCACCGGCATCAAC