1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATCAAATAGCAGCGATGGAAAGGGACACAAGCTCTAGTGATGTTTCTGCTTCTCATGTAGGACGTGCCAGGCAGCGAAGACGTCCTACTGAGgtaggctatttcattatgacaaattttagcaaacagaaaggccccttggtttctcagtatgcattgccttcatatctccgtgtttatttatttttgtggt...
species | Oryza sativa |
transcript | LOC_Os01g55360.4 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGGACGTGCCACCCTGCGAAGACGTCCTACTGAG GCTACTGCAGATGGGAATAGAACCAATGGACCAGCTTTGCTTGTCAATGATEST: gi|29673386|gb|CB669661.1|CB669661
genomic: AGGACGTGCCAGGCAGCGAAGACGTCCTACTGAGgtaggctatt ... ttttgttcagGCTACTGCAGATGGGAATAGAACCAATGGACCAGCTTTGCTTGTCAATGAT
EST: TTTCTGCTTCTCATGTAGGACGTGCCAGGCAGCGAAGACGTCCTACTGAG GCTACTGCAGATGGGAATAGAACCAATGGACCAGCTTTGCTTGTCAATGATEST: gi|58661284|gb|CK049964.1|CK049964
genomic: TTTCTGCTTCTCATGTAGGACGTGCCAGGCAGCGAAGACGTCCTACTGAGgtaggctatt ... ttttgttcagGCTACTGCAGATGGGAATAGAACCAATGGACCAGCTTTGCTTGTCAATGAT
EST: TGTCTGCTTCTCATGTAGGACGTGCCAGGCAGCGAAGACGTCCTACTGAG GCTACTGCAGATGGGAATAGAACCAATGGACCAGCTTTGCTTGTCAATGATEST: gi|88307950|gb|CI646385.1|CI646385
genomic: TTTCTGCTTCTCATGTAGGACGTGCCAGGCAGCGAAGACGTCCTACTGAGgtaggctatt ... ttttgttcagGCTACTGCAGATGGGAATAGAACCAATGGACCAGCTTTGCTTGTCAATGAT
EST: TTTCTGCTCCTCATGTACGACGTGCCACGCAGCGAAGACGTCCTACTGAG GCTACTGCAGATGGGAATAGAACCAATGGACCACCTTTGCTTGTCAATGATEST: gi|29679197|gb|CB675472.1|CB675472
genomic: TTTCTGCTTCTCATGTAGGACGTGCCAGGCAGCGAAGACGTCCTACTGAGgtaggctatt ... ttttgttcagGCTACTGCAGATGGGAATAGAACCAATGGACCAGCTTTGCTTGTCAATGAT
EST: TTTCTGCTTCTCATGTAGGACGTGCCAGGCAGCGAAGACGTCCTACTGAG GCTACTGCAGATGGGAATAGAACCAATGGACCAGCTTTGCTTGTCAATGAT
genomic: TTTCTGCTTCTCATGTAGGACGTGCCAGGCAGCGAAGACGTCCTACTGAGgtaggctatt ... ttttgttcagGCTACTGCAGATGGGAATAGAACCAATGGACCAGCTTTGCTTGTCAATGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCAAATAGCAGCGATGGAAAGGGACACAAGCTCTAGTGATGTTTCTGCTTCTCATGTAGGACGTGCCAGGCAGCGAAGACGTCCTACTGAGgtaggctatttcattatgacaaattttagcaaacagaaaggccccttggtttctcagtatgcattgccttcatatctccgtgtttatttatttttgtggt
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