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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGGGGAGGGGCCTGCCGACGCCGACCGACGAGCACCCCAAGATCTACCGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgtgagggttcggatccccctcgcgaatgcgccattgtttcgcgcttggtttaggtgtttggatgtcgttcagtgacgttactttgtctgcgtgcag

Basic information

species Oryza sativa
transcript LOC_Os01g54870.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g54870.1 (Oryza sativa), 5'ss of exon 2
lower sequence: PP1S56_243V6.3 (Physcomitrella patens), 5'ss of exon 2
TGGTGGGGAGGGGCCTGCCGACGCCGACCGACGAGCACCCCAAGATCTACCGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgtgaggg----ttcggatccccctcgcgaatgc--gccattgtttcgcgcttggtttaggtgtttggatgtcgttcagtgacgttactttgtctgcgtgcag
|||| ||| ||| |||||| ||  | ||| | |||  ||| |||   |||||||||||||| ||||| || ||||| || ||||||||||| |||||||||| ||      |||  |      | | ||      |  ||| | | |      |  | ||| |||   | |     ||  |   |    |    ||  |   
TGGTAGGGCGGGCCCTGCCCACTGCCACCAATGAGACCCCGAAGGCTTACCGCATGAAGCTATGGGCCACTAACGAAGTGCGCGCCAAGTCGAAGTTCTGgtaagtcactcttcaaaaaatatttgtgatcttcagaaattatatggtaacctggcttggtatttatgtctgagagagcaagaattgcctcctggccagt--

upper sequence: LOC_Os01g54870.1 (Oryza sativa), 5'ss of exon 2
lower sequence: PP1S74_193V6.2 (Physcomitrella patens), 5'ss of exon 2
TGGTGGGGAGGGGCCTGCCGACGCCGACCGACGAGCACCCCAAGATCTACCGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgtgagggttcggatccccctcgcgaatgcgccattgtttcgcgcttggtttaggtgtttggatgtcgttcagtgacgttactttgtctgcg-tgcag-------
|||| ||| ||| ||| || ||  ||||| | |||   || |||   |||||||||||||||||||| |||||||| || ||||||||||| ||||||||||  ||  | | |         ||||             ||| || | |||  ||  ||  |     | |   ||  ||  |   |||| | |  ||       
TGGTTGGGCGGGCCCTTCCTACCGCGACCAATGAGACACCTAAGGCTTACCGCATGAAGCTCTGGGCCACCAACGAAGTGCGCGCCAAGTCTAAGTTCTGgtatggtgttgtagtttaagttcgaaaaga----aacgacgctctcgctttgtgtaattccagagaatgcttcgaaattggtggatctgtgctttagatgatga

upper sequence: LOC_Os01g54870.1 (Oryza sativa), 5'ss of exon 2
lower sequence: PP1S5_178V6.1 (Physcomitrella patens), 5'ss of exon 2
TGGTGGGGAGGGGCCTGCCGACGCCGACCGACGAGCACCCCAAGATCTACCGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgtgagggttcggatccccctcgcgaatgcgccattgtttcgcgcttggtt-taggtgtttggatgtcgt-tcagtgacgttactttgtctgcgtgcag---
|||||||| ||| ||| || ||  | ||| | |||  ||| ||    |||||||||||||| ||||| ||||| || |||||||||||||| || ||||||| |  |||  | | |  |   |      | |||||    || | | ||  |   | | |   |||| | |  ||| | | |    | |    |   |   
TGGTGGGGCGGGCCCTTCCAACTGCAACCAATGAGGCCCCTAAAGCTTACCGCATGAAGCTTTGGGCGACCAATGAAGTCCGCGCCAAGTCTAAATTCTGgt-actgttgtgttgcttcagtcttgaaagtcattgaggagcacattgtaatgtctttctctgtgtcttctttgtgtcttgaagacgacgaaattaggtgt

upper sequence: LOC_Os01g54870.1 (Oryza sativa), 5'ss of exon 2
lower sequence: EFJ38689 (Selaginella moellendorffii), 5'ss of exon 2
TGGTGGGGAGGGGCCTGCCGACGCCGACCGACGAGCACCCCAAGATCTACCGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgtgag-ggttcggatccccctcgcgaatgcgccattgtttcgcgcttggtttaggtgtttggatgtcgttcagtgacgttactttgtctgcgtgcag
|||| ||||| |     || || ||   | | |||||||| ||||| ||||| ||||||||||||||   | |||| || |||||||||||||| |||||||||| ||    |||           || |       |||  | || | ||||  | | |   |    |  ||                        
TGGTCGGGAGAGCTACTCCCACTCCCGACAATGAGCACCCAAAGATGTACCGGATGAAGCTCTGGGCCGGCGACGAAGTGCGCGCCAAGTCCAAATTCTGgtgagtggagtcgattggatcgatcgatccatttccatttt-ctctcgatttacctttct---ttcactctag------------------------

upper sequence: LOC_Os01g54870.1 (Oryza sativa), 5'ss of exon 2
lower sequence: EFJ31458 (Selaginella moellendorffii), 5'ss of exon 2
TGGTGGGGAGGGGCCTGCCGACGCCGACCGACGAGCACCCCAAGATCTACCGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgtgagggttcggatccccctcgcgaatgcgccattgtttcgcgcttggtttaggtgtttggatgtcgttcagtgacgttactttgtctgcgtgcag
|||| || || |     || || ||   | | |||||||| ||||| ||||| ||||||||||||||   | |||| || |||||||||||||| ||||||||||   |||  ||        ||  |  | ||   ||  |  ||  | | |   |||   | || |||| |   |                   
TGGTCGGAAGAGCTACTCCCACTCCCGACAATGAGCACCCAAAGATGTACCGGATGAAGCTCTGGGCCGGCGACGAAGTGCGCGCCAAGTCCAAATTCTGgtgag---tcgagtcgatt---ggatcgatcgatccatttccattttctctcga--tttacctttctttcactctag-------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27554177|gb|CA998077.1|CA998077
EST:     CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCATGTCCAAGTTCTG                         GTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
genomic: CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgtgagggttc ... ctgcgtgcagGTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
EST: gi|8527792|gb|AU092607.1|AU092607
EST:     CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
genomic: CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgtgagggttc ... ctgcgtgcagGTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
EST: gi|163920059|gb|EG712013.1|EG712013
EST:     CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
genomic: CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgtgagggttc ... ctgcgtgcagGTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
EST: gi|88426781|gb|CI584144.1|CI584144
EST:     CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
genomic: CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgtgagggttc ... ctgcgtgcagGTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
EST: gi|88692748|gb|CI736323.1|CI736323
EST:     CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
genomic: CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgtgagggttc ... ctgcgtgcagGTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
EST: gi|58603976|gb|CK014504.1|CK014504
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
genomic: CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgtgagggttc ... ctgcgtgcagGTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
EST: gi|15854102|gb|BI806898.1|BI806898
EST:     CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
genomic: CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgtgagggttc ... ctgcgtgcagGTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
EST: gi|88591210|gb|CI708131.1|CI708131
EST:     CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
genomic: CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgtgagggttc ... ctgcgtgcagGTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
EST: gi|218487192|gb|FG947791.1|FG947791
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
genomic: CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgtgagggttc ... ctgcgtgcagGTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
EST: gi|33660274|gb|CF291241.1|CF291241
EST:     CGTATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
genomic: CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgtgagggttc ... ctgcgtgcagGTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
EST: gi|86870246|gb|CI319352.1|CI319352
EST:     CCGCGCCAAGTCCAATTTCTG                         GTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAAC-GGCAGATCCT
genomic: CCGCGCCAAGTCCAAGTTCTGgtgagggttc ... ctgcgtgcagGTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
EST: gi|218491613|gb|FG954645.1|FG954645
EST:     CGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
genomic: CGAGGTCCGCGCCAAGTCCAAGTTCTGgtgagggttc ... ctgcgtgcagGTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
EST: gi|88398227|gb|CI588115.1|CI588115
EST:     GCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTTG                         GTACTTCCTCCGCAAGCTGAAGAATGTGAAGAAGAGCAACGGGCAGATCC
genomic: GCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCT-Ggtgagggttc ... ctgcgtgcagGTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCC
EST: gi|38480189|gb|CF964278.1|CF964278
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
genomic: CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgtgagggttc ... ctgcgtgcagGTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
EST: gi|163920061|gb|EG712015.1|EG712015
EST:     CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
genomic: CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgtgagggttc ... ctgcgtgcagGTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
EST: gi|2311521|gb|C27676.1|C27676
EST:     CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
genomic: CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgtgagggttc ... ctgcgtgcagGTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
EST: gi|88579846|gb|CI691836.1|CI691836
EST:     CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
genomic: CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgtgagggttc ... ctgcgtgcagGTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
EST: gi|88403881|gb|CI611536.1|CI611536
EST:     CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
genomic: CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgtgagggttc ... ctgcgtgcagGTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
EST: gi|88734587|gb|CI758095.1|CI758095
EST:     CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
genomic: CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgtgagggttc ... ctgcgtgcagGTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
EST: gi|58591145|gb|CF989453.1|CF989453
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
genomic: CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgtgagggttc ... ctgcgtgcagGTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
EST: gi|88356780|gb|CI619266.1|CI619266
EST:     CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
genomic: CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgtgagggttc ... ctgcgtgcagGTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
EST: gi|88572140|gb|CI663711.1|CI663711
EST:     CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
genomic: CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgtgagggttc ... ctgcgtgcagGTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
EST: gi|88308773|gb|CI653660.1|CI653660
EST:     CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
genomic: CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgtgagggttc ... ctgcgtgcagGTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
EST: gi|58681970|gb|CK070657.1|CK070657
EST:     GGGCCACCAACGAGGT-CGCGCCAAGTCCAAGTTCTG                         GTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
genomic: GGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgtgagggttc ... ctgcgtgcagGTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
EST: gi|88422346|gb|CI689157.1|CI689157
EST:     CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
genomic: CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgtgagggttc ... ctgcgtgcagGTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
EST: gi|88743392|gb|CI766900.1|CI766900
EST:     CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
genomic: CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgtgagggttc ... ctgcgtgcagGTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
EST: gi|33817115|gb|CF334396.1|CF334396
EST:     CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
genomic: CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgtgagggttc ... ctgcgtgcagGTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
EST: gi|287211|gb|D16015.1|D16015
EST:     CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
genomic: CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgtgagggttc ... ctgcgtgcagGTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
EST: gi|30226603|gb|CB964495.1|CB964495
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
genomic: CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgtgagggttc ... ctgcgtgcagGTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
EST: gi|30229141|gb|CB967032.1|CB967032
EST:     ACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTCCGCAAGCTGAAGAAAGGTGAAGAAGAGCAACGGCCAGATCC
genomic: ACGAGGTCCGCGCCAAGTCCAAGTTCTGgtgagggttc ... ctgcgtgcagGTACTTCCTCCGCAAGCTGAAG-AAGGTGAAGAAGAGCAACGGGCAGATCC
EST: gi|88720686|gb|CI743985.1|CI743985
EST:     CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
genomic: CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgtgagggttc ... ctgcgtgcagGTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
EST: gi|89198515|gb|CI016600.1|CI016600
EST:     TGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
genomic: TGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgtgagggttc ... ctgcgtgcagGTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
EST: gi|88591569|gb|CI709609.1|CI709609
EST:     CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
genomic: CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgtgagggttc ... ctgcgtgcagGTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
EST: gi|55411639|gb|CV724015.1|CV724015
EST:     CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
genomic: CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgtgagggttc ... ctgcgtgcagGTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
EST: gi|88737708|gb|CI761216.1|CI761216
EST:     CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
genomic: CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgtgagggttc ... ctgcgtgcagGTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
EST: gi|44675111|gb|CR288545.1|CR288545
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
genomic: CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgtgagggttc ... ctgcgtgcagGTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
EST: gi|88343377|gb|CI621745.1|CI621745
EST:     CGGATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTCCGCCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCC
genomic: CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgtgagggttc ... ctgcgtgcagGTACTTCCTCCG-CAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCC
EST: gi|88333775|gb|CI643807.1|CI643807
EST:     CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
genomic: CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgtgagggttc ... ctgcgtgcagGTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
EST: gi|88328846|gb|CI646921.1|CI646921
EST:     CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
genomic: CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgtgagggttc ... ctgcgtgcagGTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
EST: gi|27576862|gb|CA999556.1|CA999556
EST:     CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
genomic: CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgtgagggttc ... ctgcgtgcagGTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
EST: gi|88426140|gb|CI574023.1|CI574023
EST:     CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
genomic: CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgtgagggttc ... ctgcgtgcagGTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
EST: gi|88422928|gb|CI615228.1|CI615228
EST:     CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
genomic: CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgtgagggttc ... ctgcgtgcagGTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
EST: gi|27577262|gb|CA999956.1|CA999956
EST:     AGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCACCTTCTG                         GTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
genomic: AGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgtgagggttc ... ctgcgtgcagGTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
EST: gi|88725288|gb|CI748547.1|CI748547
EST:     CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTCCGNAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
genomic: CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgtgagggttc ... ctgcgtgcagGTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
EST: gi|88334861|gb|CI648636.1|CI648636
EST:     CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
genomic: CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgtgagggttc ... ctgcgtgcagGTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
EST: gi|218488907|gb|FG956921.1|FG956921
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
genomic: CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgtgagggttc ... ctgcgtgcagGTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
EST: gi|86601364|gb|CI251738.1|CI251738
EST:     TGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
genomic: TGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgtgagggttc ... ctgcgtgcagGTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
EST: gi|4714280|gb|AU058247.1|AU058247
EST:     CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTG                         GTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT
genomic: CGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgtgagggttc ... ctgcgtgcagGTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 64 (upstream exon), 75 (downstream exon)
Score: 129

TGGTGGGGAGGGGCCTGCCGACGCCGACCGACGAGCACCCCAAGATCTACCGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgtgagggttc ... ctgcgtgcagGTACTTCCTCCGCAAGCTGAAGAAGGTGAAGAAGAGCAACGGGCAGATCCTTGCCATCAACGAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGTGGGGAGGGGCCTGCCGACGCCGACCGACGAGCACCCCAAGATCTACCGCATGAAGCTCTGGGCTACCAACGAGGTCCGCGCCAAGTCCAAGTTCTGgtgagggttcggatccccctcgcgaatgcgccattgtttcgcgcttggtttaggtgtttggatgtcgttcagtgacgttactttgtctgcgtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC