Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|572443|gb|D41954.1|D41954EST: AACCTGTTTCTGTCAAAAGTGGCCAGTTCATTGTTGAAGTCAAACCTCAN GGAGTAAGCAAGGGAGTAGTAGCTGAGA
genomic: AACCTGTTTCTGTCAAAAGTGGCCAGTTCATTGTTGAAGTCAAACCTCAGgttagttcat ... aatactgcagGGAGTAAGCAAGGGAGTAGTAGCTGAGA
EST:
gi|88234859|gb|CI232710.1|CI232710EST: AACCTGTTTCTGTCAAAAGTGGCCAGTTCATTGTTGAAGTCAAACCTCAG GGAGTAAGCAAGGGAGTGGTAGCTGAGAAGATACTCGTCTCAATGAAGGAG
genomic: AACCTGTTTCTGTCAAAAGTGGCCAGTTCATTGTTGAAGTCAAACCTCAGgttagttcat ... aatactgcagGGAGTAAGCAAGGGAGTAGTAGCTGAGAAGATACTCGTCTCAATGAAGGAG
EST:
gi|87031848|gb|CI272549.1|CI272549EST: ATTGTTGAAGTCAAACCTCAG GGAGTAAGCAAGGGAGTAGTAGCTGAGAAGATACTCGTCTCAATGAAGGAG
genomic: ATTGTTGAAGTCAAACCTCAGgttagttcat ... aatactgcagGGAGTAAGCAAGGGAGTAGTAGCTGAGAAGATACTCGTCTCAATGAAGGAG
EST:
gi|86869341|gb|CI339065.1|CI339065EST: GTCAAAAGTGGCCAGTTCATTGTTGAAGTCAAACCTCAG GGAGTAAGCAAGGGAGTAGTAGCTGAGAAGATACTCGTCTCAATGAAGGAG
genomic: GTCAAAAGTGGCCAGTTCATTGTTGAAGTCAAACCTCAGgttagttcat ... aatactgcagGGAGTAAGCAAGGGAGTAGTAGCTGAGAAGATACTCGTCTCAATGAAGGAG
EST:
gi|86858429|gb|CI273035.1|CI273035EST: AACCTGTTTCTGTCAAAAGTGGCCAGTTCATTGTTGAAGTCAAACCTCAG GGAGTAAGCAAGGGAGTAGTAGCTGAGAAGATACTCGTCTCAATGAAGGAG
genomic: AACCTGTTTCTGTCAAAAGTGGCCAGTTCATTGTTGAAGTCAAACCTCAGgttagttcat ... aatactgcagGGAGTAAGCAAGGGAGTAGTAGCTGAGAAGATACTCGTCTCAATGAAGGAG
EST:
gi|87037918|gb|CI192540.1|CI192540EST: GCCAGTTCATTGTTGAAGTCAAACCTCAG GGAGTAAGCAAGGGAGTAGTAGCTGAGAAGATACTCGTCTCAATGAAGGAG
genomic: GCCAGTTCATTGTTGAAGTCAAACCTCAGgttagttcat ... aatactgcagGGAGTAAGCAAGGGAGTAGTAGCTGAGAAGATACTCGTCTCAATGAAGGAG
EST:
gi|87023217|gb|CI272045.1|CI272045EST: CCAGTTCATTGTTGAAGTCAAACCTCAG GGAGTAAGCAAGGGAGTAGTAGCTGAGAAGATACTCGTCTCAATGAAGGAG
genomic: CCAGTTCATTGTTGAAGTCAAACCTCAGgttagttcat ... aatactgcagGGAGTAAGCAAGGGAGTAGTAGCTGAGAAGATACTCGTCTCAATGAAGGAG
EST:
gi|87040603|gb|CI195225.1|CI195225EST: TGGCCAGTTCATTGTTGAAGTCAAACCTCAG GGAGTAAGCAAGGGAGTAGTAGCTGAGAAGATACTCGTCTCAATGAAGGAG
genomic: TGGCCAGTTCATTGTTGAAGTCAAACCTCAGgttagttcat ... aatactgcagGGAGTAAGCAAGGGAGTAGTAGCTGAGAAGATACTCGTCTCAATGAAGGAG
EST:
gi|86600818|gb|CI356575.1|CI356575EST: AACCTGTTTCTGTCAAAAGTGGCCAGTTCATTGTTGAAGTCAAACCTCAG GGAGTAAGCAAGGGAGTAGTAGCTGAGAAGATACTCGTCTCAATGAAGGAG
genomic: AACCTGTTTCTGTCAAAAGTGGCCAGTTCATTGTTGAAGTCAAACCTCAGgttagttcat ... aatactgcagGGAGTAAGCAAGGGAGTAGTAGCTGAGAAGATACTCGTCTCAATGAAGGAG
EST:
gi|86858264|gb|CI271140.1|CI271140EST: TCATTGTTGAAGTCAAACCTCAG GGAGTAAGCAAGGGAGTAGTATCTGAGAAGATACTCGTCTCAAAGAAGGAG
genomic: TCATTGTTGAAGTCAAACCTCAGgttagttcat ... aatactgcagGGAGTAAGCAAGGGAGTAGTAGCTGAGAAGATACTCGTCTCAATGAAGGAG
EST:
gi|87021398|gb|CI274005.1|CI274005EST: CCAGTTCATTGTTGAAGTCAAACCTCAG GGAGTAAGCAAGGGAGTAGTAGCTGAGAAGATACTCGTCTCAATGAAGGAG
genomic: CCAGTTCATTGTTGAAGTCAAACCTCAGgttagttcat ... aatactgcagGGAGTAAGCAAGGGAGTAGTAGCTGAGAAGATACTCGTCTCAATGAAGGAG
EST:
gi|29630629|gb|CB635638.1|CB635638EST: AACCTGTTTCTGTCAAAAGTGGCCAGTTCATTGTTGAAGTCAAACCTCAG GGAGTAAGCAAGGGAGTAGTAGCTGAGAAGATACTCGTCTCAATGAAGGAG
genomic: AACCTGTTTCTGTCAAAAGTGGCCAGTTCATTGTTGAAGTCAAACCTCAGgttagttcat ... aatactgcagGGAGTAAGCAAGGGAGTAGTAGCTGAGAAGATACTCGTCTCAATGAAGGAG
EST:
gi|87038409|gb|CI193031.1|CI193031EST: AACCTGTTTCTGTCAAAAGTGGCCAGTTCATTGTTGAAGTCAAACCTCAG GGAGTAAGCAAGGGAGTAGTAGCTGAGAAGATACTCGTCTCAATGAAGGAG
genomic: AACCTGTTTCTGTCAAAAGTGGCCAGTTCATTGTTGAAGTCAAACCTCAGgttagttcat ... aatactgcagGGAGTAAGCAAGGGAGTAGTAGCTGAGAAGATACTCGTCTCAATGAAGGAG
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 1 RNA-Seqlibrary.
Block sizes:
70 (upstream exon),
75 (downstream exon)
Score:
28CTCCCAGGCAAAGGAGTTACTTGATCATCTGGAAAGTGTATTAGCAAATGAACCTGTTTCTGTCAAAAGTGGCCAGTTCATTGTTGAAGTCAAACCTCAGgttagttcat ... aatactgcagGGAGTAAGCAAGGGAGTAGTAGCTGAGAAGATACTCGTCTCAATGAAGGAGAGAGGAAAGCAGGCTGACTTTGTATTATGCATTGGTGATGACAGGTCGG
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