1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CCTTTGGCAGACGCATTGCATTACCAGAACCATGATGTGATCAAGATCTTGGAAAAGCATGGCTCCAAGCTTAAGgtacttccgaactattatgtacgggcattttgtcttcctgatgtactgctatgttcaagttttctgaatttatttcctttttttttttttttgaag
species | Oryza sativa |
transcript | LOC_Os01g54480.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGAACCATGATGTGATCAAGATCTTGGAAAAGCATGGCTCCAAGCTTAAG ATTGCTCCTATGCATGTTAAAAATGTCCGTGAGGTTCCTGAGTACGAGATTEST: gi|29633163|gb|CB638172.1|CB638172
genomic: AGAACCATGATGTGATCAAGATCTTGGAAAAGCATGGCTCCAAGCTTAAGgtacttccga ... ttttttgaagATTGCTCCTATGCATGTTAAAAATGTCCGTGAGGTTCCTGAGTACGAGATT
EST: AGAACCATGATGTGATCAAGATCTTGGAAAAGCATGGCTCCAAGCTTAAG ATTGCTCCTATGCATGTTAAAAATGTCCGTGAGGTTCCTGAGTACGEST: gi|29678487|gb|CB674762.1|CB674762
genomic: AGAACCATGATGTGATCAAGATCTTGGAAAAGCATGGCTCCAAGCTTAAGgtacttccga ... ttttttgaagATTGCTCCTATGCATGTTAAAAATGTCCGTGAGGTTCCTGAGTACG
EST: AGAACCATGATGTGATCAAGATCTTGGAAAAGCATGGCTCCAAGCTTAAG ATTGCTCCTATGCATGTTAAAAATGTCCGTGAGGTTCCTGAGTACGAGATTEST: gi|58694022|gb|CK082709.1|CK082709
genomic: AGAACCATGATGTGATCAAGATCTTGGAAAAGCATGGCTCCAAGCTTAAGgtacttccga ... ttttttgaagATTGCTCCTATGCATGTTAAAAATGTCCGTGAGGTTCCTGAGTACGAGATT
EST: AGAACCATGATGTGATCAAGATCTTGGAAAAGCATGGCTCCAAGCTTAAG ATTGCTCCTATGCATGTTAAAAATGTCCGTGAGGTTCCTGAGTACGAGATT
genomic: AGAACCATGATGTGATCAAGATCTTGGAAAAGCATGGCTCCAAGCTTAAGgtacttccga ... ttttttgaagATTGCTCCTATGCATGTTAAAAATGTCCGTGAGGTTCCTGAGTACGAGATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTTTGGCAGACGCATTGCATTACCAGAACCATGATGTGATCAAGATCTTGGAAAAGCATGGCTCCAAGCTTAAGgtacttccgaactattatgtacgggcattttgtcttcctgatgtactgctatgttcaagttttctgaatttatttcctttttttttttttttgaag
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