1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTTAGTTTCTTTCCAAAGCACTCCAAGACCACCAGCAGCACTACTACGACAACTGGAGCAAAGAGGGGATTCATAGACACAGTTGAGGACAAAACAGAAGgtaacaaacagcttttcagttctctcgtgagcttgttcttgaaacatgtttatacttgggattagaaacatggaaacaaactgatggaagcactgaactgaaaattactcttttgttgctttataag
species | Oryza sativa |
transcript | LOC_Os01g53880.6 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AACTGGAGCAAAGAGGGGATTCATAGACACAGTTGAGGNCACAACAGAAG GTTATAACGACCAGAAGCAGCAGGCAAGGGCAGGATGTGGGAAGGAACTTGEST: gi|58695140|gb|CK083827.1|CK083827
genomic: AACTGGAGCAAAGAGGGGATTCATAGACACAGTTGAGGACAAAACAGAAGgtaacaaaca ... gctttataagGTTATAACGACCAGAAGCAGCAGGCAAGGGCAGGATGTGGGAAGGAACTTG
EST: AACTGGAGCAAAGAGGGGATTCATAGACACAGTTGAGGACAAAACAGAAG GTTATAACGACCAGAAGCAGCAGGCAAGGGCAGGATGTGGGAAGGAACTTG
genomic: AACTGGAGCAAAGAGGGGATTCATAGACACAGTTGAGGACAAAACAGAAGgtaacaaaca ... gctttataagGTTATAACGACCAGAAGCAGCAGGCAAGGGCAGGATGTGGGAAGGAACTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTAGTTTCTTTCCAAAGCACTCCAAGACCACCAGCAGCACTACTACGACAACTGGAGCAAAGAGGGGATTCATAGACACAGTTGAGGACAAAACAGAAGgtaacaaacagcttttcagttctctcgtgagcttgttcttgaaacatgtttatacttgggattagaaacatggaaacaaactgatggaagcactgaactgaaaattactcttttgttgctttataag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG