1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GCGTGACCAAACGATCCGGCGGCGCAGGTGGTGGCGGAGCAAGCCGTACTACCGGCCAACCGGACGCGAAGCGCGGAGGAGTCAACAAGAGCCTCAAGAGgcaagtgatcagttaagctagcttaattttgcgtgaatttttactacttgtactgcatgatgctactcgtgttggtttgttcttcag
species | Oryza sativa |
transcript | LOC_Os01g52480.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACCGCCCAACCGAACGCGAAGCGCGGAGGAGTCAACAAGAGCCTCAAGAG GGTCAGGAAGCTGTCGGAGATGACGGAGAAGATGAGCCAGTCGTTGCTCGAEST: gi|86597874|gb|CI276660.1|CI276660
genomic: ACCGGCCAACCGGACGCGAAGCGCGGAGGAGTCAACAAGAGCCTCAAGAGgcaagtgatc ... tgttcttcagGGTCAGGAAGCTGTCGGAGATGACGGAGAAGATGAGCCAGTCGTTGCTCGA
EST: GCCAACCGGACGCGAAGCGCGGAGGAGTCAACAAGAGCCTCAAGAG GGTCAGGAAGCTGTCGGAGATGACGGAGAAGATGAGCCAGTCGTTGCTCGAEST: gi|86501629|gb|CI144262.1|CI144262
genomic: GCCAACCGGACGCGAAGCGCGGAGGAGTCAACAAGAGCCTCAAGAGgcaagtgatc ... tgttcttcagGGTCAGGAAGCTGTCGGAGATGACGGAGAAGATGAGCCAGTCGTTGCTCGA
EST: GACGCGAAGCGCGGAGGAGTCAACAAGAGCCTCAAGAG GGTCAGGAAGCTGTCCGGAGATGACGGAGAAGATGAGCCAGTCGTTGCTCG
genomic: GACGCGAAGCGCGGAGGAGTCAACAAGAGCCTCAAGAGgcaagtgatc ... tgttcttcagGGTCAGGAAGCTGT-CGGAGATGACGGAGAAGATGAGCCAGTCGTTGCTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGTGACCAAACGATCCGGCGGCGCAGGTGGTGGCGGAGCAAGCCGTACTACCGGCCAACCGGACGCGAAGCGCGGAGGAGTCAACAAGAGCCTCAAGAGgcaagtgatcagttaagctagcttaattttgcgtgaatttttactacttgtactgcatgatgctactcgtgttggtttgttcttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG