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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAAAAATTCTTCTTTCCATAACAAGCGGACATCCACAAGATAACTTGAATATTGTACTTCATCCGTCACAGTTACAAACCCCAAGACTCCAAAGCTTAGgtctgaaagttaatggacctataccctgagatgctttcatttttgtttatcatgtcatgtattctgaactatatgcaacttaccatatttattattttctag

Basic information

species Oryza sativa
transcript LOC_Os01g51290.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|396941635|gb|HO188292.1|HO188292
EST:     TATTGTACTTCATCCGTCACAGTTACAAACCCCAAGACTCCAAAGCTTAG                         GACTAAATGTAAAACCACCTGCAGCAACTAGCAGACGTGTTAACATACAGC
genomic: TATTGTACTTCATCCGTCACAGTTACAAACCCCAAGACTCCAAAGCTTAGgtctgaaagt ... tattttctagGACTAAATGTAAAACCACCTGCAGCAACTAGCAGACGTGTTAACGTACAGC
EST: gi|86423364|gb|CI060937.1|CI060937
EST:     TCATCCGTCACAGTTACAAACCCCAAGACTCCAAAGCTTAG                         GACTAAATGTAAAACCACCTGCAGCAACTAGCAGACGTGTTAACGTACAGC
genomic: TCATCCGTCACAGTTACAAACCCCAAGACTCCAAAGCTTAGgtctgaaagt ... tattttctagGACTAAATGTAAAACCACCTGCAGCAACTAGCAGACGTGTTAACGTACAGC