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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACATAATAGAACCATTCCATCGATTTGTTGGATCGGATATGATGACAGACCTCAGATACCCCATGAAAGACAACACAGTCCCATTTTGGGCGGTCCCGgtaaacatcttacccttctagttctatccaacagatttcctttggcctgtacaggtaattaaagtttcttgaaaattcatgctttcgtag

Basic information

species Oryza sativa
transcript LOC_Os01g49820.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g49820.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G077187_T01 (Zea mays), 5'ss of exon 2
GAACATAATAGAACCATTCCATCGATTTGTTGGATCGGATATGATGACAGACCTCAGATACCCCATGAAAGACAACACAGTCCCATTTTGGGCGGTCCCGgtaa-acatcttacccttctagttctatccaacagatttcctttggcctgtacaggtaattaaagtttcttgaaaattcatgctttcgtag
 || ||||||||||| |||||||| || || ||||| || ||||||||||||||||||||||||||||| | ||| ||||| ||||||||||| || ||||||| | |   | | ||| | ||| || ||     |||||  |   ||| |     ||| |||  |||||| | |  ||||||||    ||
TAATATAATAGAACCCTTCCATCGCTTCGTCGGATCAGAAATGATGACAGACCTCAGATACCCCATGAAGGGCAATACAGTGCCATTTTGGGCTGTGCCGgtaacatactgttctcttttggttttaccctgtcaatttcaatgaacctct-----taaataagttttcttaata--tcatgcttgttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33687572|gb|CF315811.1|CF315811
EST:     ACCTCAGATACCCCATGAAAGACAACACAGTCCCATTTTGGGCGGTCCCG                         ATAATTGGTATCATTGGACCAATGATTATCATCACTGGAATATACTTCAAG
genomic: ACCTCAGATACCCCATGAAAGACAACACAGTCCCATTTTGGGCGGTCCCGgtaaacatct ... gctttcgtagATAATTGGTATCATTGGACCAATGATTATCATCACTGGAATATACTTCAAG