1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ACCTAATGGAAGTAAAGGAAACTCTGGGGCAAGATCATCCACTGCCTCTAGCACTGGTGGGAGGAAAGGGAAGTCAAGTTCAAGCAAGGCTGATTCAGTGgtaatttctgtcaaacagttgttcttctcagttttcatttgagcaaatatgttgtgttcgtgttcttagttttctcctgtaaatgataggcaaaacacaa...
species | Oryza sativa |
transcript | LOC_Os01g49000.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCACTGGTGGGAGGAAAGGGAAGTCAAGTTCAAGCAAGGCTGATTCAGTG AGTAGCGATGCTGAAGAAGGCAAGTCCAAGAAGGGGCAATATGAAGGACCAEST: gi|58694007|gb|CK082694.1|CK082694
genomic: GCACTGGTGGGAGGAAAGGGAAGTCAAGTTCAAGCAAGGCTGATTCAGTGgtaatttctg ... tttcttacagAGTAGCGATGCTGAAGAAGGCAAGTCCAAGAAGGGGCAATATGAAGGACCA
EST: GCACTGGTGGGAGGAAAGGGAAGTCAAGTTCAAGCAAGGCTGATTCAGTG AGTAGCGATGCTGAAGAAGGCAAGTCCAAGAAGGGGCAATATGAAGGACCAEST: gi|218505102|gb|FG952252.1|FG952252
genomic: GCACTGGTGGGAGGAAAGGGAAGTCAAGTTCAAGCAAGGCTGATTCAGTGgtaatttctg ... tttcttacagAGTAGCGATGCTGAAGAAGGCAAGTCCAAGAAGGGGCAATATGAAGGACCA
EST: GCACTGGTGGGAGGAAAGGGAAGTCAAGTTCAAGCAAGGCTGATCCAGTG AGTAGCGATGCTGAAGAAGGCAAGTCCAAGAAGGGCCAATATGAAGGACCA
genomic: GCACTGGTGGGAGGAAAGGGAAGTCAAGTTCAAGCAAGGCTGATTCAGTGgtaatttctg ... tttcttacagAGTAGCGATGCTGAAGAAGGCAAGTCCAAGAAGGGGCAATATGAAGGACCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCTAATGGAAGTAAAGGAAACTCTGGGGCAAGATCATCCACTGCCTCTAGCACTGGTGGGAGGAAAGGGAAGTCAAGTTCAAGCAAGGCTGATTCAGTGgtaatttctgtcaaacagttgttcttctcagttttcatttgagcaaatatgttgtgttcgtgttcttagttttctcctgtaaatgataggcaaaacacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT