1 5' 3' | 2 5' 3' | 3 5' 3' |
AGGCGAGCCGATGCACGCCGAGAGTGGGTACTGGCGGCCCCGCCCCGACGGCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAGgtgagctcctactgccaatcgagttattattctaaacgtggcctgatgttaagagtctatcttgcacctgcaatgctccttgagaacaatcgcaaattgc...
species | Oryza sativa |
transcript | LOC_Os01g48760.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAG AAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGEST: gi|88334302|gb|CI642547.1|CI642547
genomic: GCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAGgtgagctcct ... caaattgcagAAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCG
EST: GCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAG AAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTTEST: gi|88762854|gb|CI772410.1|CI772410
genomic: GCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAGgtgagctcct ... caaattgcagAAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTT
EST: GCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAG AAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTTEST: gi|88349798|gb|CI634333.1|CI634333
genomic: GCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAGgtgagctcct ... caaattgcagAAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTT
EST: GCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAG AAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTTEST: gi|88491247|gb|CI428519.1|CI428519
genomic: GCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAGgtgagctcct ... caaattgcagAAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTT
EST: CGCAGAGCACTGGTCTGGCCGAGGTTCAG AAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTTEST: gi|88317589|gb|CI672171.1|CI672171
genomic: CGCAGAGCACTGGTCTGGCCGAGGTTCAGgtgagctcct ... caaattgcagAAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTT
EST: GCTCCGTCGAGGTTGTCATCTCGCACAGCACTGGTCTGGCCGAGGTTCAG AAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTTEST: gi|88477298|gb|CI414569.1|CI414569
genomic: GCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAGgtgagctcct ... caaattgcagAAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTT
EST: GCCGAGGTTCAG AAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTTEST: gi|88587859|gb|CI705639.1|CI705639
genomic: GCCGAGGTTCAGgtgagctcct ... caaattgcagAAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTT
EST: GCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAG AAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTTEST: gi|88577442|gb|CI674029.1|CI674029
genomic: GCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAGgtgagctcct ... caaattgcagAAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTT
EST: GCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAG AAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTTEST: gi|88665244|gb|CI710078.1|CI710078
genomic: GCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAGgtgagctcct ... caaattgcagAAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTT
EST: GCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAG AAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTTEST: gi|88308803|gb|CI654086.1|CI654086
genomic: GCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAGgtgagctcct ... caaattgcagAAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTT
EST: GCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAG AAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTTEST: gi|25799413|gb|CA755374.1|CA755374
genomic: GCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAGgtgagctcct ... caaattgcagAAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTT
EST: GCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAG AAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTTEST: gi|88210949|gb|CI212589.1|CI212589
genomic: GCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAGgtgagctcct ... caaattgcagAAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTT
EST: GCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAG AAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTTEST: gi|88283283|gb|CI404729.1|CI404729
genomic: GCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAGgtgagctcct ... caaattgcagAAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTT
EST: CTCCGTCGAGGGTTGTCATCTCGCANAGCACTGGTCTGGCCGAGGTTCAG AAGGGTTCGTTTGATGCTGAAAAGAAAACANTGACGCTCCAAAGCGAACTTEST: gi|88580222|gb|CI692224.1|CI692224
genomic: CTCCGTCGA-GGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAGgtgagctcct ... caaattgcagAAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTT
EST: GCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAG AAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTTEST: gi|86850381|gb|CI307610.1|CI307610
genomic: GCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAGgtgagctcct ... caaattgcagAAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTT
EST: GCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAG AAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACEST: gi|13165563|gb|AU174360.1|AU174360
genomic: GCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAGgtgagctcct ... caaattgcagAAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAAC
EST: GCTCCGTNGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAG AAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTTEST: gi|88593295|gb|CI709458.1|CI709458
genomic: GCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAGgtgagctcct ... caaattgcagAAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTT
EST: GCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAG AAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAAEST: gi|86417819|gb|CI032028.1|CI032028
genomic: GCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAGgtgagctcct ... caaattgcagAAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAA
EST: GCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAG AAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTTEST: gi|88408609|gb|CI686112.1|CI686112
genomic: GCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAGgtgagctcct ... caaattgcagAAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTT
EST: GCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAG AAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTTEST: gi|88514546|gb|CI442052.1|CI442052
genomic: GCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAGgtgagctcct ... caaattgcagAAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTT
EST: CAGAGCACTGGTCTGGCCGAGGTTCAG AAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTTEST: gi|56157672|gb|C25211.2|C25211
genomic: CAGAGCACTGGTCTGGCCGAGGTTCAGgtgagctcct ... caaattgcagAAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTT
EST: GCTCCGTCGAGGTTGTCATCTCGCAGA-CACTGGTCTGGCCGAGGTTCAG AAGGGTTCGTTTGATGCTGAAAAGAAAAEST: gi|88290434|gb|CI665223.1|CI665223
genomic: GCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAGgtgagctcct ... caaattgcagAAGGGTTCGTTTGATGCTGAAAAGAAAA
EST: GCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAG AAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTTEST: gi|88761851|gb|CI771407.1|CI771407
genomic: GCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAGgtgagctcct ... caaattgcagAAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTT
EST: GCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAG AAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTTEST: gi|88825494|gb|CI776059.1|CI776059
genomic: GCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAGgtgagctcct ... caaattgcagAAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTT
EST: GCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAG AAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTT
genomic: GCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAGgtgagctcct ... caaattgcagAAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGCGAGCCGATGCACGCCGAGAGTGGGTACTGGCGGCCCCGCCCCGACGGCTCCGTCGAGGTTGTCATCTCGCAGAGCACTGGTCTGGCCGAGGTTCAGgtgagctcctactgccaatcgagttattattctaaacgtggcctgatgttaagagtctatcttgcacctgcaatgctccttgagaacaatcgcaaattgc
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