Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|218479027|gb|FG957912.1|FG957912EST: GAAGAGAGAGCATACTCAGCTGACCTGTTTGAAGAAATGCGGAAAATAAG GCGTATTGGTACATGGCCAGTAGCAATACATGTTGGGACAAAGTACAGAGT
genomic: GAAGAGAGAGCATACTCAGCTGACCTGTTTGAAGAAATGCGGAAAATAAGgtgacaaccc ... tgttctgcagGCGTTTTGGTACATGGCCAGTAGCAATACATGTTGGGACAAAGTACAGAGT
EST:
gi|33676774|gb|CF305013.1|CF305013EST: GAAGAGAGAGCATACTCAGCTGACCTGTTTGAAGAAATGCGGAAAATAAG GGCGTTTTGGTACATGGCCAGTAGCAATACATGTTGGGAC
genomic: GAAGAGAGAGCATACTCAGCTGACCTGTTTGAAGAAATGCGGAAAATAAGgtgacaaccc ... tgttctgcagG-CGTTTTGGTACATGGCCAGTAGCAATACATGTTGGGAC
EST:
gi|58683938|gb|CK072625.1|CK072625EST: GAAGAGAGAGCATACTCAGCTGACCTGTTTGAAGAAATGCGGAAAATAAG GCGTTTTGGTACATGTGCCAGTAGCAATACATGTTGGTGACAAAGTACAGA
genomic: GAAGAGAGAGCATACTCAGCTGACCTGTTTGAAGAAATGCGGAAAATAAGgtgacaaccc ... tgttctgcagGCGTTTTGGTACATG-GCCAGTAGCAATACATGTTGG-GACAAAGTACAGA
EST:
gi|29614630|gb|CB619643.1|CB619643EST: GAAGAGAGAGCATACTCAGCTGACCTGTTTGAAGAAATGCGGAAAATAAG GCGTTTTGGTACATGGCCAGTAGCAATACATGTTGGGACAAAGTACAGAGT
genomic: GAAGAGAGAGCATACTCAGCTGACCTGTTTGAAGAAATGCGGAAAATAAGgtgacaaccc ... tgttctgcagGCGTTTTGGTACATGGCCAGTAGCAATACATGTTGGGACAAAGTACAGAGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTTTCACATTAAGAAGCACCGTCTAGATGGTATAGTGCATTTCGCTGATGAAGAGAGAGCATACTCAGCTGACCTGTTTGAAGAAATGCGGAAAATAAGgtgacaaccctttgctaacactttcttttctgcaccggcatgtactatgaccttgtttttcataaattcctgacagaacctaatagtataaatactttac
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA