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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGGGGCGCGCGCTGCCGACCCCCGGCGATGAGCACCCCAAGATCTACCGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagccgtcatctcgtcattttcttgcgattttgtgggttttcttttttagttcatcttatctcgtgcggtttgctgattggggcgcttgcccggtgtgcag

Basic information

species Oryza sativa
transcript LOC_Os01g47660.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g47660.1 (Oryza sativa), 5'ss of exon 2
lower sequence: AC230013.2_FGT007 (Zea mays), 5'ss of exon 2
TGGTGGGGCGCGCGCTGCCGACCCCCGGCGATGAGCACCCCAAGATCTACCGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagccgtcatctcgtcattttcttgcgattttgtgggttttcttttttag---ttcatcttatctcgtgcggtttgctgattggggcgct----tgcccggtgtgcag
|||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||| | |||||    || |    ||  |  | |  |||| || ||  ||   ||| || | |   |||||  | |  ||||   |  ||    |   | ||| ||||
TGGTGGGGCGCGCGCTGCCGACGCCCGGCGACGAGCACCCCAAGATCTACCGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTGgtgagctgccatct----atatctgcgct-tcctttatgtttcctgttgaaggatttcttcgtcttaggtgcgagtcgtcgattaatgtactgctgttatctgtgcgcag

upper sequence: LOC_Os01g47660.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G126928_T01 (Zea mays), 5'ss of exon 2
TGGTGGGGCGCGCGCTGCCGACCCCCGGCGATGAGCACCCCAAGATCTACCGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagc--cgtcatct---cgt-cattttcttgcgattttgtgggttttcttttttagttcatcttatctcg-tgcggtttgctgattggggcgct----tgcccggtgtgcag
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||  || |||||    || |  || |||  | |||  | | |      || |  | |  |   | ||| ||||| | |  ||||   |  ||    |     ||| ||||
TGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAGCACCCCAAGATCTACCGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccgccatctatatgtgcgattccttcaggtttccttgttgaaggattattttccccccattttcgatgcgggtcgtcgattaacgtactgttgttgtgagtgcgcag

upper sequence: LOC_Os01g47660.1 (Oryza sativa), 5'ss of exon 2
lower sequence: PP1S74_193V6.2 (Physcomitrella patens), 5'ss of exon 2
TGGTGGGGCGCGCGCTGCCGACCCCCGGCGATGAGCACCCCAAGATCTACCGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagccgtcatctcgtcattttcttgcgattttgtgggttttcttttt-tagttc-atcttatctcgtgcggtttgctgattggggcgcttgcccggtgtgcag
|||| ||||| || || || ||| |   | |||||   || |||   ||||| |||||||||||||||||||| || || |||||||||   ||||||||||  |  ||  |    | | ||      ||      |   |  |||| | || ||| |    ||     |   || |  |||  | ||  ||    | ||     
TGGTTGGGCGGGCCCTTCCTACCGCGACCAATGAGACACCTAAGGCTTACCGCATGAAGCTCTGGGCCACCAACGAAGTGCGCGCCAAGTCTAAGTTCTGgtatggtgttgtagtttaagttcgaaaagaaacgacgctctcgctttgtgtaattccagagaatgcttcgaaattggtggatctgtgc-tttagatgatga----

upper sequence: LOC_Os01g47660.1 (Oryza sativa), 5'ss of exon 2
lower sequence: PP1S5_178V6.1 (Physcomitrella patens), 5'ss of exon 2
TGGTGGGGCGCGCGCTGCCGACCCCCGGCGATGAGCACCCCAAGATCTACCGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagccgtcatctcgtcattttcttgcgattttgtgggttttcttttttagttcatcttatctcgtgcggtttgctgattgggg-cgcttgcccggtgtgcag
|||||||||| || || || ||  |   | |||||  ||| ||    ||||| |||||||| ||||| |||||||| ||||||||||||   || |||||||   | ||  | | |      |||||  | |   || |       || || |   | |      ||    ||||    |||  | ||          |||   
TGGTGGGGCGGGCCCTTCCAACTGCAACCAATGAGGCCCCTAAAGCTTACCGCATGAAGCTTTGGGCGACCAATGAAGTCCGCGCCAAGTCTAAATTCTGgt--actgttgtgttgcttcagtcttgaaagtcattgaggagcacattgtaatgtctttctctgtgtcttctttgtgtcttgaagacgacgaaattaggtgt--

upper sequence: LOC_Os01g47660.1 (Oryza sativa), 5'ss of exon 2
lower sequence: EFJ38689 (Selaginella moellendorffii), 5'ss of exon 2
TGGTGGGGCGCGCGCTGCCGACCCCCGGCGATGAGCACCCCAAGATCTACCGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagccgtcatctcgtcattttcttgcgattttgtgggttttcttttttagttcatcttatctcgtgcggtttgctgattggggcgcttgcccggtgtgcag
|||| ||| | ||    || || |||| | |||||||||| ||||| |||||||||||||||||||||  | | || || |||||||||  ||| |||||||||   ||    |||      ||   ||||    |    |||  | |  | ||    || | ||   |                                  
TGGTCGGGAGAGCTACTCCCACTCCCGACAATGAGCACCCAAAGATGTACCGGATGAAGCTCTGGGCCGGCGACGAAGTGCGCGCCAAGTCCAAATTCTGgtga---gtggagtcgattggatcgatcgatccatttccattttctctcgatttacctttctttcactctag-------------------------------

upper sequence: LOC_Os01g47660.1 (Oryza sativa), 5'ss of exon 2
lower sequence: EFJ31458 (Selaginella moellendorffii), 5'ss of exon 2
TGGTGGGGCGCGCGCTGCCGACCCCCGGCGATGAGCACCCCAAGATCTACCGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagccgtcatctcgtcattttcttgcgattttgtgggttttcttttttagttcatcttatctcgtgcggtttgctgattggggcgcttgcccggtgtgcag
|||| ||  | ||    || || |||| | |||||||||| ||||| |||||||||||||||||||||  | | || || |||||||||  ||| |||||||||   |||   |||      ||   ||||    |    |||  | |  | ||    || | ||   |                                  
TGGTCGGAAGAGCTACTCCCACTCCCGACAATGAGCACCCAAAGATGTACCGGATGAAGCTCTGGGCCGGCGACGAAGTGCGCGCCAAGTCCAAATTCTGgtga---gtcgagtcgattggatcgatcgatccatttccattttctctcgatttacctttctttcactctag-------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|55408379|gb|CV720755.1|CV720755
EST:     CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
genomic: CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagccgtc ... cggtgtgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
EST: gi|88342764|gb|CI640097.1|CI640097
EST:     CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
genomic: CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagccgtc ... cggtgtgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
EST: gi|88576648|gb|CI670793.1|CI670793
EST:     CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
genomic: CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagccgtc ... cggtgtgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
EST: gi|88294407|gb|CI667381.1|CI667381
EST:     CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
genomic: CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagccgtc ... cggtgtgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
EST: gi|88394948|gb|CI607675.1|CI607675
EST:     CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGGAGGTGAAGAAGAGCAACGGCCAGATGCT
genomic: CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagccgtc ... cggtgtgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
EST: gi|88327272|gb|CI645049.1|CI645049
EST:     CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
genomic: CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagccgtc ... cggtgtgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
EST: gi|58586171|gb|CF984479.1|CF984479
EST:     CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
genomic: CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagccgtc ... cggtgtgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
EST: gi|88398681|gb|CI598646.1|CI598646
EST:     CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
genomic: CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagccgtc ... cggtgtgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
EST: gi|88424004|gb|CI689702.1|CI689702
EST:     CGGATGAAGCTCTGGGCCANCAATGAGGTCCGNGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
genomic: CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagccgtc ... cggtgtgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
EST: gi|33663958|gb|CF294925.1|CF294925
EST:     CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
genomic: CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagccgtc ... cggtgtgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
EST: gi|58690556|gb|CK079243.1|CK079243
EST:     CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
genomic: CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagccgtc ... cggtgtgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
EST: gi|88315282|gb|CI611946.1|CI611946
EST:     CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
genomic: CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagccgtc ... cggtgtgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
EST: gi|88743134|gb|CI766642.1|CI766642
EST:     CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
genomic: CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagccgtc ... cggtgtgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
EST: gi|88385715|gb|CI566577.1|CI566577
EST:     CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
genomic: CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagccgtc ... cggtgtgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
EST: gi|33684522|gb|CF312761.1|CF312761
EST:     CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
genomic: CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagccgtc ... cggtgtgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
EST: gi|88347489|gb|CI637429.1|CI637429
EST:     CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
genomic: CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagccgtc ... cggtgtgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
EST: gi|88398693|gb|CI598658.1|CI598658
EST:     CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
genomic: CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagccgtc ... cggtgtgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
EST: gi|88371069|gb|CI597546.1|CI597546
EST:     CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
genomic: CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagccgtc ... cggtgtgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
EST: gi|88302033|gb|CI667879.1|CI667879
EST:     CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
genomic: CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagccgtc ... cggtgtgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
EST: gi|8404434|gb|AU091788.1|AU091788
EST:     CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
genomic: CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagccgtc ... cggtgtgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
EST: gi|2311805|gb|C27960.1|C27960
EST:     CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
genomic: CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagccgtc ... cggtgtgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
EST: gi|11025940|gb|AU162541.1|AU162541
EST:     CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
genomic: CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagccgtc ... cggtgtgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
EST: gi|218491808|gb|FG954124.1|FG954124
EST:     GGATGAAGCTCTGGGCCACCAAGTGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
genomic: GGATGAAGCTCTGGGCCACCAA-TGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagccgtc ... cggtgtgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
EST: gi|218486350|gb|FG969949.1|FG969949
EST:     CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
genomic: CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagccgtc ... cggtgtgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
EST: gi|88316067|gb|CI618943.1|CI618943
EST:     CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
genomic: CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagccgtc ... cggtgtgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
EST: gi|88350432|gb|CI653876.1|CI653876
EST:     CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
genomic: CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagccgtc ... cggtgtgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
EST: gi|15852890|gb|BI805686.1|BI805686
EST:     CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
genomic: CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagccgtc ... cggtgtgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
EST: gi|38478666|gb|CF962799.1|CF962799
EST:     CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
genomic: CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagccgtc ... cggtgtgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
EST: gi|88325950|gb|CI649801.1|CI649801
EST:     CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
genomic: CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagccgtc ... cggtgtgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
EST: gi|58594085|gb|CF992393.1|CF992393
EST:     CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAGGGTGAAGAAGAGCAACGGCCAGATGCT
genomic: CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagccgtc ... cggtgtgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
EST: gi|88325640|gb|CI648077.1|CI648077
EST:     CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
genomic: CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagccgtc ... cggtgtgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
EST: gi|88328319|gb|CI651330.1|CI651330
EST:     CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
genomic: CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagccgtc ... cggtgtgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
EST: gi|218499852|gb|FG954107.1|FG954107
EST:     CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT
genomic: CGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagccgtc ... cggtgtgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 64 (upstream exon), 75 (downstream exon)
Score: 83

TGGTGGGGCGCGCGCTGCCGACCCCCGGCGATGAGCACCCCAAGATCTACCGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagccgtc ... cggtgtgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGTGGGGCGCGCGCTGCCGACCCCCGGCGATGAGCACCCCAAGATCTACCGGATGAAGCTCTGGGCCACCAATGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagccgtcatctcgtcattttcttgcgattttgtgggttttcttttttagttcatcttatctcgtgcggtttgctgattggggcgcttgcccggtgtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG