1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GAAGCAGCCATCAAGAAAAAATATGGTGGAATACTGCCCAAGAGGACGCCACATATAACTAAGgtcaatgccttctttattttagtatatttgtttttctctgttaaaatgatgattattgtataaaggtgaaacagatgtatggttaagttgcatttcttactgagcttatgtaatacttaaactggaataatctatcag
species | Oryza sativa |
transcript | LOC_Os01g47490.3 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGAAAAAATATGGTGGAATACTGCCCAAGAGGACGCCACATATAACTAAG GATCATGATCGGGCTTACTTTGATTCTGCTGATTGGGCTCTAGGCAAGEST: gi|88974597|gb|CI022138.1|CI022138
genomic: AGAAAAAATATGGTGGAATACTGCCCAAGAGGACGCCACATATAACTAAGgtcaatgcct ... aatctatcagGATCATGATCGGGCTTACTTTGATTCTGCTGATTGGGCTCTAGGCAAG
EST: GAGGACGCCACATATAACTAAG GATCATGATCGGGCTTACTTTGATTCTGCTGATTGGGCTCTAGGCAAGEST: gi|33691810|gb|CF320049.1|CF320049
genomic: GAGGACGCCACATATAACTAAGgtcaatgcct ... aatctatcagGATCATGATCGGGCTTACTTTGATTCTGCTGATTGGGCTCTAGGCAAG
EST: GAAAAAATATGGTGGAATACTGCCCAAGAGGACGCCACATATAANCTAAG GATCATGATCGGGCTTACTTTGATTCTGCTGATTGGGCTCTAGGCAAGEST: gi|55827447|gb|AU030657.2|AU030657
genomic: GAAAAAATATGGTGGAATACTGCCCAAGAGGACGCCACATATAA-CTAAGgtcaatgcct ... aatctatcagGATCATGATCGGGCTTACTTTGATTCTGCTGATTGGGCTCTAGGCAAG
EST: AATACTGCCCAAGA-GACGCCACATATAACTAAG GATCATGATCGGGCTTACTTTGATTCTGCTGATTGGGCTCTAGGCAAGEST: gi|428444|gb|D24594.1|D24594
genomic: AATACTGCCCAAGAGGACGCCACATATAACTAAGgtcaatgcct ... aatctatcagGATCATGATCGGGCTTACTTTGATTCTGCTGATTGGGCTCTAGGCAAG
EST: AGAAAAAATATGGTGGAATACTGCCCAAGAGGACGCCACATATAACTAAG GATCATGATCGGGCTTACTTTGATTCTGCTGATTGGGCTCTAGGCAAGEST: gi|88975414|gb|CI023665.1|CI023665
genomic: AGAAAAAATATGGTGGAATACTGCCCAAGAGGACGCCACATATAACTAAGgtcaatgcct ... aatctatcagGATCATGATCGGGCTTACTTTGATTCTGCTGATTGGGCTCTAGGCAAG
EST: GAATACTGCCCAAGAGGACGCCAC--ATAACTAAG GATCATGATCGGGCTTACTTTGATTCTGCTGATTGGGCTCTAGGCAAG
genomic: GAATACTGCCCAAGAGGACGCCACATATAACTAAGgtcaatgcct ... aatctatcagGATCATGATCGGGCTTACTTTGATTCTGCTGATTGGGCTCTAGGCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGCAGCCATCAAGAAAAAATATGGTGGAATACTGCCCAAGAGGACGCCACATATAACTAAGgtcaatgccttctttattttagtatatttgtttttctctgttaaaatgatgattattgtataaaggtgaaacagatgtatggttaagttgcatttcttactgagcttatgtaatacttaaactggaataatctatcag
- - - - - - - - - - - TGGTGG
- - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - AGAGGA